Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq564 223 4e-53 seq1779 149 7e-31 seq394 93.3 5e-14 >seq564 Length=19258 Score = 223 bits (246), Expect = 4e-53 Identities = 1109/1741 (64%), Gaps = 54/1741 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || || |||||||| || ||||| |||||||| ||||| | ||| | ||||| || | | Sbjct 18344 CGCAGGTAGTACATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTG 18285 Query 105650 AGCTTG---GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATG 105706 || | | ||| | | ||||| | | ||| | ||||| ||| ||| || |||||| Sbjct 18284 AGTTGGCTTGACTTGGG-GGACT--CGAGGAATAAATTCAAACTCTGAGATTGATCAATG 18228 Query 105707 AAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG----ATTTCCCACAC 105762 | ||||| ||| ||||| ||||||| ||||| ||| ||||||||||| Sbjct 18227 TACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTT----TTGGCGAATTTCCCACAC 18172 Query 105763 TGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCC 105822 | ||| || | ||| || ||||| || ||| ||||| || || Sbjct 18171 GATCTTGTACAGCTCTCTGAGCTCCAGCGGGATTTCGTTGATCCCTTGAACGGAGCCGTT 18112 Query 105823 CGCCTTGACC-ATGAGATCCTTC---ATATCCTTGGACCAAAGACCAATCTTCTTGAGAT 105878 ||| ||| |||| | || ||||||| || ||| || ||| ||| |||| | Sbjct 18111 CGC----ACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGGT 18056 Query 105879 CATTGACGAGATGCTTGTTGACAATCACA---AACTCTCCCGCGAGGGTTCTTCTCAGAT 105935 | || || | |||||||| | ||| ||||| || ||| | | || | Sbjct 18055 CCACCACAAGGTACTTGTTGA---TGACAGGGAACTCACCGCTGAGCACACGGCGAAGGT 17999 Query 105936 AGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 105995 ||||||||| ||| ||||||| ||||| || || || || | ||| || | |||||| | Sbjct 17998 AGATGTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATG 17939 Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCT 106055 | || |||||||| || | | ||| ||| || | ||| || | || |||| Sbjct 17938 CGGTGGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCT 17879 Query 106056 TGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGAA 106112 |||| ||||||| || | ||||| | ||| ||||||| || || |||| Sbjct 17878 TGAGGGAGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTACCCCACATGTCGAACTGAA 17819 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | |||||||||| ||||| || | || || ||||| | || | || | || | Sbjct 17818 GAATGCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGGCGA 17759 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || ||||| | || ||| |||| || || || || ||||| | |||| || Sbjct 17758 TGTCGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCAACT 17699 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCT 106291 || ||||| | || | | || ||| | || || | ||||| | || Sbjct 17698 TCTGAGCTTCGGGGCTCGCGAAGG-GAAGGCGCATGAGGATGAACGCGTCCGCCAAGCCC 17640 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 ||||| || | |||| ||| | || || | || || || || ||||| Sbjct 17639 TGAACTCCAAGGCCAACAGGGCGATGGCGGAAGTTGCTGCGGCGGGCCTCTTCGACGGGG 17580 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 || || || | ||||| ||| ||| | || || ||||||||| ||| | Sbjct 17579 TAGAAGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTTGTGACTTCGTAC 17520 Query 106412 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 106471 | | || ||| || | | ||||| || || ||| ||||| || || || Sbjct 17519 AAACGCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGAAGTGCAATCGAC 17460 Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531 || | ||||| ||||| ||| ||| |||||||| | ||| ||||| || | | Sbjct 17459 GCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGG 17400 Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591 ||||| | ||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 17399 TTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTG 17340 Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCG 106651 || | ||||||||| || || || || |||| |||| || || || ||||| || Sbjct 17339 TACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTCT 17280 Query 106652 GCGGCTGGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGC 106707 |||| | ||||| | | | || ||||| | |||||| | || ||| | || Sbjct 17279 TGGGCTTG---AATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTG-GTACAACGC 17224 Query 106708 TTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 || ||||| || ||| || || | ||| || || || || || | |||| Sbjct 17223 CTCGAACTCATC-GCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAG 17165 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | | || ||||| ||||||||||| | ||| || ||||| || | | Sbjct 17164 TCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGA 17105 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG--TCGTAACTCAAGGAACTC 106884 | | |||| | || || || | || |||| | || || | | ||| || Sbjct 17104 ACAAGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGT--AAGAAGTC 17047 Query 106885 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCC 106941 | || || ||||||| ||||| || || ||||||| | ||||| || | || Sbjct 17046 AAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCC 16987 Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATC 107001 | | |||| || || ||||| ||| ||| | || ||||| | |||| || || | Sbjct 16986 ACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTT 16927 Query 107002 TGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGC 107059 || || || || || | || |||| | | || ||| ||||||||| Sbjct 16926 GGACGTGCCGTTCGTACCACTGATGTACGCGCCGGAGCTGCGGATACA--GTGGATGTGC 16869 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 107119 | || ||||| || || ||| ||| | ||| | | | || || | ||||| Sbjct 16868 AGGCCGATACCACCGGCAGCCTTGCTGATGCGAGCAGCTTGCTTGAGGGTATCGTAGATG 16809 Query 107120 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 107179 || | ||| ||||||||||| | || | |||||||||| |||||||||||| || Sbjct 16808 CCTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGA 16749 Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCG 107239 || || |||||||| |||||||| || ||||| ||||| || || || | | ||| Sbjct 16748 GTGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAGCAGTTCG 16689 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || |||||| ||| | || ||| | ||||||| |||| || ||||||| ||| Sbjct 16688 TACGTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGACACGCAGCAAC 16629 Query 107300 A 107300 | Sbjct 16628 A 16628 >seq1779 Length=53708 Score = 149 bits (164), Expect = 7e-31 Identities = 306/445 (69%), Gaps = 15/445 (3%) Strand=Plus/Minus Query 117000 CTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 |||||| |||||||| ||||| || | |||| || | ||||| ||||| || || || Sbjct 29242 CTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCATGAAGTCGAAGGGGTT 29183 Query 117060 CTTCGCGTTCCAAATGG----GTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACAT 117115 ||| ||| |||| | ||||| | | | || | || ||||| |||| || Sbjct 29182 CTTGGCGCCGAAAATCGTCTCGTGGC---CAAGCGTGATC-AGCAGACGGTCCGCAACGA 29127 Query 117116 ACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCGT 117175 |||| ||||||| || |||| || |||||||| ||||| ||| ||||| |||| Sbjct 29126 ACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGACGCACGGGGAGCGCGT 29067 Query 117176 CCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA-GTT--T 117232 | |||||||| | ||||| ||| | || || || | ||| || |||| | | | Sbjct 29066 CGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCTCGCGGATGCGCTCCT 29007 Query 117233 CGGT-AGTGGGTCTATTACGCAAAGTCTTGAAGAGC-TCCACGGCAAACTCCTGGTGGAG 117290 || | || || | | | | ||| | | ||| | |||| | || || |||||| Sbjct 29006 CGCTCAGCTTGTTCACCAGGTACT-TCTCGTACAGCATGCACG-CGAAGTCGGTGTGGAG 28949 Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||||| || || || || || || || |||||| ||||| ||||| || || ||||| Sbjct 28948 GCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCGCGCTT 28889 Query 117351 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||||| ||| | || | |||||| ||||| |||||||| ||||| || || || Sbjct 28888 CTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCCTCAACCGCGGCGAA 28829 Query 117411 CGCAAAAAGGCGCTCGGCGAAGGAG 117435 ||||| |||||||||||||||||| Sbjct 28828 CGCAACGAGGCGCTCGGCGAAGGAG 28804 >seq394 Length=4795 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| |||||| ||||||||||||||| ||||||||||| | || Sbjct 1566 GCTCGTATAGTGTAGTGGTTATCACTCTGGACTTTGAATCCAGAAACCCTGGTTCGAGTC 1625 Query 136224 CAGGTAGGAGCTTT 136237 |||||| |||| || Sbjct 1626 CAGGTATGAGCATT 1639 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| |||||| ||||||||||||||| ||||||||||| | || Sbjct 2064 GCTCGTATAGTGTAGTGGTTATCACTCTGGACTTTGAATCCAGAAACCCTGGTTCGAGTC 2123 Query 136224 CAGGTAGGAGCTTT 136237 |||||| |||| || Sbjct 2124 CAGGTATGAGCATT 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964162541440