Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1968 95.1 1e-13 >seq1968 Length=6703 Score = 95.1 bits (104), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || ||||| || || || || ||| ||||||||||| || |||||||| || |||| Sbjct 232 ACAGTACCTGCCTACTTCAACGACGTCCAACGTCAAGCCACCAAAGATGCCGGGGCTATT 291 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || ||| | || || ||||||| || ||||| || || ||||| |||| ||||| Sbjct 292 GCGGGTCTTGAGGTGATTAGTATTATGAACGAACCCACAGCCGCTGCTGTTGCTTATGGT 351 Query 550529 CTTGATAAA------CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||||||| | ||| ||| | | | || |||||||||||| |||||| Sbjct 352 CTTGATAAAATCGGTGACAATCATCGCAAGCGCGACGTGCTCATCTTTGATCTTGGAGG 410 Score = 86.0 bits (94), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || ||| ||||||||||| || |||||||| || |||| Sbjct 833 ACGGTGCCTGCCTACTTCAACGACGTCCAACGTCAAGCCACCAAAGATGCCGGGGCTATT 892 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || ||| | || || ||||||| || || || || || ||||| |||| ||||| Sbjct 893 GCGGGTCTTGAGGTGATTAGTATTATGAACGAGCCCACAGCCGCTGCTGTTGCTTATGGT 952 Query 550529 CTTGATAAA------CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||||||| | ||| ||| | | | || |||||||||||| |||||| Sbjct 953 CTTGATAAAATCGGTGACAATCATCGCAAGCGCGACGTGCTCATCTTTGATCTTGGAGG 1011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029176692545440