Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1779 242 7e-59 seq564 125 1e-23 >seq1779 Length=53708 Score = 242 bits (268), Expect = 7e-59 Identities = 578/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||| |||| Sbjct 29260 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTC 29201 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCA-GGCCCATC-TGTTCCAGC 47956 ||||||| ||||||||| | | | | | || || |||| | | || || ||| Sbjct 29200 CATGAAGTCGAAGGGGTTCTTGGCGCCGAAAATC-GTCTCGTGGCCAAGCGTGATC-AGC 29143 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | ||||| ||| |||||||||| | | ||| || | |||||| || || || Sbjct 29142 AGACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGA 29083 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||||| | || | || ||||||||||| ||| |||||| || || | ||| Sbjct 29082 CGCACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATC 29023 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | ||| ||| | ||||| ||||| ||| | || |||||||| || Sbjct 29022 TCGCGGATGCGCTCCTCGCTCAGCTTGTTCACCAGGTACTTCTCGTACAGCATGCACGCG 28963 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||| | ||| ||||| || ||| ||| ||||||||||| ||| |||||| Sbjct 28962 AAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGC 28903 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || || |||||||| || | ||| ||| || |||||||||||| Sbjct 28902 ATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCC 28843 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || |||||||| ||| | ||| |||| || ||| | | || ||||||| Sbjct 28842 TCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGA--GGTTGTCGACT-TGATCCAG 28786 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA---G 48373 | ||||| || |||||| || |||||| || |||||||| || ||| || | Sbjct 28785 CGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAGG 28726 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 ||| ||| ||| | ||| | ||||| || |||| | |||| | || Sbjct 28725 CGCTGCTT---CTCGGTGGTGTCGCGGATGTAGGTCTCGATCAGCATGCTGTACGTTTCG 28669 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||| | ||||| || ||||||||||| ||||||||| | |||||| | || Sbjct 28668 CTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTTG 28609 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || || ||| | ||| || |||||| || || || || || || ||| Sbjct 28608 ACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGATGCCGTCGCTGGCGGCGAAG 28549 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 || ||||||| || || | ||| |||||||||| || | | || || | |||| ||| Sbjct 28548 AACGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCGTCGTTCAGCGCGTCCCAGTCCTTC 28489 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTA 48672 | ||| |||||||||| | || |||| |||||||| || | | | || | ||||| Sbjct 28488 ATGTCGCTGCCCAGGTCGATCTCCTCCATCGTCCAGAACGAGCTCTCG-GCCTCCTTGTA 28430 Query 48673 CATGCCCCATATGTCCGGATAG 48694 | | ||| |||||||||||| Sbjct 28429 CTTCTTCCAGATGTCCGGATAG 28408 >seq564 Length=19258 Score = 125 bits (138), Expect = 1e-23 Identities = 378/577 (66%), Gaps = 14/577 (2%) Strand=Plus/Minus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 || |||||||| || || ||||| | | | |||||||| | ||||| ||||| ||| Sbjct 17459 GCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGG 17400 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||| ||| || ||||||| ||||| ||||| ||| |||| || ||||||| Sbjct 17399 TTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTG 17340 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || | ||||||||||| ||||| || | ||| ||| | || ||| | ||| | || | Sbjct 17339 TACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACA-GTTC 17281 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 ||| ||||| | | | | | | | | | || |||||| | | ||| | | | Sbjct 17280 TTGGGCTTGA--ATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTGGTACAACGCC 17223 Query 213735 TTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| || | ||| || | | | | || || ||| ||| ||| |||||| | Sbjct 17222 TCGAACTCATCGCCATAGCAATCAG-CGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGT 17164 Query 213794 CCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 ||| | | ||| | | || | || |||||||| ||| |||| ||| ||| || ||| Sbjct 17163 CCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAA 17104 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCG---CAGATCTAGAAAGTC 213910 || ||| | | | | || ||| |||| | ||||| |||| || ||||| Sbjct 17103 CAAGTCTCGAGCACGCTGTTCATCCTTGCCAG---TGTTGCGCTTCAGAAGTAAGAAGTC 17047 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG-- 213968 ||| ||||| ||||||||||||||| ||| | || || || ||| | ||||||| Sbjct 17046 AAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCC 16987 Query 213969 -CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| ||||| | || |||| | | || || | ||| || || ||||| Sbjct 16986 ACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTT 16927 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAG 214064 |||| ||||| || || || |||| ||||||| Sbjct 16926 GGACGTGCCGTTCGTACCACTGATGTACGCGCCGGAG 16890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931506530775040