Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq564 194 3e-44 seq1779 178 2e-39 >seq564 Length=19258 Score = 194 bits (214), Expect = 3e-44 Identities = 523/789 (66%), Gaps = 17/789 (2%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || ||||||||| | || |||| | |||||||| |||||| Sbjct 17459 GCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGG 17400 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| |||||| || || |||| || || || || ||| ||| ||| |||||| Sbjct 17399 TTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTG 17340 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || | ||| |||| ||| || || | ||||| | | || ||| | ||| |||||| Sbjct 17339 TACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTCT 17280 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| | ||| | | || || ||||| |||| | | | |||| | || | Sbjct 17279 TGGGCTTGAATGGTCTTAAT-ACCGCGGCCCTCAGTCTCGT-AGCGCTGGTACAACGCCT 17222 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 | |||| || || || || | ||||| ||| | ||| ||| ||| | Sbjct 17221 --CGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGT 17164 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||| | || ||| | || || | || |||||| | ||| |||||||| ||| | | || Sbjct 17163 CCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAA 17104 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 | |||| | ||||| || ||| ||| |||| | ||||| || || ||||| Sbjct 17103 CAAGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCAAA 17044 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 |||||| |||||||||||||||| || || || | || || |||||| |||||| Sbjct 17043 AATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCACC 16984 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||||||||| | | | ||| | | ||||| || || || |||||||| Sbjct 16983 CTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGA 16924 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAG-ACAT 222309 ||||| || || | ||||||| |||||| || || ||| ||| | || Sbjct 16923 CGTGCCGTTCGTACCACTGATGTACG---CGCCGGAGCTGCGGATACAGTGGATGTGCAG 16867 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATG-GCGCAGCT--CTTGAGAGTGTCCATGAT 222366 ||||||||||||||| || | | ||| | |||||| |||||| || || ||| Sbjct 16866 GCCGATACCACCGGCAGCCTT---GCTGATGCGAGCAGCTTGCTTGAGGGTATCGTAGAT 16810 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426 ||| || || ||||||||||| | || || || |||||||||||||| | || || Sbjct 16809 GCCTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGG 16750 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 | | ||| || || || || || ||||||| || || ||||| ||| | ||| || Sbjct 16749 AGTGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAGCAGTTC 16690 Query 222487 GTACGTCTC 222495 ||||||||| Sbjct 16689 GTACGTCTC 16681 >seq1779 Length=53708 Score = 178 bits (196), Expect = 2e-39 Identities = 552/853 (65%), Gaps = 13/853 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| ||| ||||||| |||| | | ||| |||||| || ||||| || Sbjct 28415 GACATCTGGAAGAAGTACAAGGAGGCCGAGAGCTCGTTCTGGACGATGGAGGAGATCGAC 28474 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||| || |||||| | | |||| |||| || | | ||||||| || || ||||| Sbjct 28475 CTGGGCAGCGACATGAAGGACTGGGACGCGCTGAACGACGACGAGCGCCACTTCATCAAG 28534 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||| || || || ||| ||||| || |||| | Sbjct 28535 CACATCCTTGCGTTCTTCGCCGCCAGCGACGGCATCGTGCTTGAGAACCTCGCCGAGCGC 28594 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | || || || | |||||| || |||||||| |||||||| || || Sbjct 28595 TTCATGACCGACGTCAAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCGATG 28654 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||| || ||| || ||| | ||| ||||| ||| | || Sbjct 28655 GAGAACATCCACAGCGAAACGTACAGCATGCTGATCGAGACCTACATCCGCGACACCACC 28714 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || ||||||| || |||||| || ||| ||||| || |||||||| | Sbjct 28715 GAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAG 28774 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||||||| |||||||| | | | | || | || | |||||| || || || || Sbjct 28775 TGGGCCATGCGCTGGATCAAGT-CGACAAC-CTCC-TTCGCCGAGCGCCTCGTTGCGTTC 28831 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 || || || ||||||||||| || ||| || ||| ||||||||||||| ||| | Sbjct 28832 GCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCT-CCATCTTCTGGCTGAAGAA 28890 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||| || || ||| ||||||||||| ||| | |||||||| || Sbjct 28891 GCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCT 28950 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 ||||| || || || ||| |||| ||| | || || | |||| | | || Sbjct 28951 CCACACCGACTTCGCGTGCATGCTGTACGAGAAGTACCTGGTGAACAAGCTGAGCGAGGA 29010 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | | || | ||||| || || |||| ||||||||||||||| Sbjct 29011 GCGCATCCGCGAGATCATTGGCGACGCCGTGGCGATCGAGAAGGAGTTCATCTGCGACGC 29070 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | || |||||| | || ||| ||| ||||| |||| || Sbjct 29071 GCTCCCCGTGCGTCTGATCGGAATGAACTCCGATCTGATGGCCCAGTACATCGAGTTCGT 29130 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC--TCTACAGTACGCC--TAACC 26248 || |||| ||||||| | ||| || | || |||| | | | | |||| |||| Sbjct 29131 TGCGGACCGTCTGCTGATCACGCTTGGCCACG--AGACGATTTTCGG--CGCCAAGAACC 29186 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| | || || | |||| ||||| |||||||| || |||| || Sbjct 29187 CCTTCGACTTCATGGAGATGATCTCCCTTCAAGGCAAGACGAACTTCTTCGAGAAGAAGG 29246 Query 26309 TCGGCGACTATCA 26321 ||||||| || || Sbjct 29247 TCGGCGAGTACCA 29259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928818606576640