Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2119 89.7 3e-12 seq1968 87.8 1e-11 seq1348 87.8 1e-11 >seq2119 Length=28796 Score = 89.7 bits (98), Expect = 3e-12 Identities = 180/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| |||||||||||||| || ||||| ||| || || | ||| | | || | | Sbjct 6599 TGCTATTGGTATTGATTTGGGCACTACCTACTCCTGCGTTGGTGTCTTCAAGAACGACCA 6658 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||||||||| ||||| | || || || || |||||| || || Sbjct 6659 GGTTGAGATTATTGCCAATGACCAGGGTAACCGCACGACCCCGTCGTATGTTGGCTTCAC 6718 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| | || | ||| |||| ||||| || || | || | || || || || Sbjct 6719 TGAGTCCGAGCGCCTTGTTGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCACCAA 6778 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||| | || || || || | |||||||||| || || || || || | | ||||| Sbjct 6779 CACTGTCTTCGACGCGAAGCGCCTGATTGGTCGCAAGTTCGACGACCCCGATCTTCAATC 6838 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGT 474594 ||| ||| || ||||| || ||||| Sbjct 6839 TGACATGAAGCACTGGCCCTTCAAGGT 6865 >seq1968 Length=6703 Score = 87.8 bits (96), Expect = 1e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 ||||||||||| || |||||||| || ||||| |||||| | || | ||||||| Sbjct 259 CAACGTCAAGCCACCAAAGATGCCGGGGCTATTGCGGGTCTTGAGGTGATTAGTATTATG 318 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || ||||| ||||| || || ||||||||||||||||||| Sbjct 319 AACGAACCCACAGCCGCTGCTGTTGCTTATGGTCTTGATAA 359 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 474717 TTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAAC 474776 ||||| | ||||| | | || || | || || || || || || || || |||| Sbjct 804 TTGGAAAGGAAGTCAAAAAAGCCGTTGTGACGGTGCCTGCCTACTTCAACGACGTCCAAC 863 Query 474777 GTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||||||| || |||||||| || ||||| |||||| | || | ||||||| || | Sbjct 864 GTCAAGCCACCAAAGATGCCGGGGCTATTGCGGGTCTTGAGGTGATTAGTATTATGAACG 923 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 | || ||||| || || ||||||||||||||||||| Sbjct 924 AGCCCACAGCCGCTGCTGTTGCTTATGGTCTTGATAA 960 >seq1348 Length=59028 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/178 (73%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 474695 AAACAAACCGC-GAGCTCATATCTTGGACAAGAAG--TAACTGATGCAGTAATTACTGTT 474751 |||||| ||| |||| | ||||||| ||||||| | | || || || ||||| ||| Sbjct 18940 AAACAATGCGCAGAGCGCC-ATCTTGG-CAAGAAGGTTGTCCGA-GCTGTGATTACAGTT 18996 Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 || || || || |||||| | || |||||||||||| |||||| ||| |||||| || Sbjct 18997 CCTGCGTACTTCAATGATGCACAGCGTCAAGCAACTCGAGATGCCGGAGCAATTGCCGGG 19056 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 ||| | || | || ||||| || || || || || || |||||| || || |||| Sbjct 19057 CTTGACGTGATCCGCATTATCAACGAGCCCACCGCGGCGGCACTTTGCTACGGACTTG 19114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268082429213888