Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq386 152 7e-32 seq1033 87.8 2e-12 >seq386 Length=26907 Score = 152 bits (168), Expect = 7e-32 Identities = 389/592 (66%), Gaps = 24/592 (4%) Strand=Plus/Minus Query 47946 AATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACC 48005 |||||| | || || || || | || || | |||||||| |||||||| |||||||| Sbjct 13355 AATCTTTTGCGTGACGAACGTGGCGCCGCGACGGGGAGATTCGTGATTAAACAGAATACC 13296 Query 48006 ACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAG 48065 | || | || ||||| | ||||| ||||| | |||||||| | || || Sbjct 13295 GTTGGTAGCGAAGATACCGTAGGCCTCACGGTAGTTGATAGTAATCCAGTAAGCGTACAG 13236 Query 48066 TTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTC 48125 || || || | || || ||| || ||||| || || ||||| ||||| ||| |||| Sbjct 13235 CTTGGCGACTGCGTAGGGGCTACGGGGGTAGAAGGGGGTCGTCTCCGTCTGAGGAATCTC 13176 Query 48126 TTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCA- 48184 || ||||| || || || || |||||| ||||| |||| ||| || Sbjct 13175 CTGGACCTTGCCGTACAGCTCCGAGGTGGAGGCTTGGTAGAA-----------CTTGCAG 13127 Query 48185 -TCTCAAGCAAAC---------GGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCT 48234 | |||| | || ||| || || |||| | |||||||| | ||||||| Sbjct 13126 GTGTCAATGAGACCGTTGGCTCGGATCGCGTCGAGCAGCTTTAGGGTGCCGACGGCATCT 13067 Query 48235 GTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGA 48294 |||||| | || ||||| ||||| || || || ||||| || || ||| || | || Sbjct 13066 GTCTGAGCGGTGTACTCAGGCATGTCGAAGGACACCTTCACGTGCGACTGGGCAGCCAGG 13007 Query 48295 TTATAAATCTCATCTGG-TTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGT 48353 || ||||||||| || |||| || || | | | || ||| || Sbjct 13006 TTGTAAATCTCAGTGGGCTTGAGTGTGGC-AACGAGGTGGTGGAGAACGGTGCCGTCGGT 12948 Query 48354 TAAGTCTCCATAATGCAATTTTAATTGATCATAAATGTGATCAATTCTATGTGTATTAAT 48413 | ||| || || || | ||| | || || ||||| ||||| | | ||||||| Sbjct 12947 CATGTCGCCGTAGTGGAGTTTAATGCTCTCGTAGATGTGGTCAATGCGCTTGGTATTAAA 12888 Query 48414 TAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTGC 48473 | || || || ||||||||||| |||||||| || ||||| ||||| || || || || Sbjct 12887 GTACGAGGCGCGGCGGACAATACCGTGAACCTCGTATCCCTTCTCAAGCAGCAGCTCAGC 12828 Query 48474 TAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTTCATA 48525 | || || || ||||| || || || |||||||| | |||||| ||| || Sbjct 12827 GAGATACGAGCCGTCTTGGCCGGTGATGCCAGTGATAAGAGCAACCTTCCTA 12776 >seq1033 Length=3252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| ||| | ||||| ||||| |||||| ||| | Sbjct 1447 TGGAGAATAACGGATTCGAACCGTTGACCCCCTGCGTGCAAGGCAGGTGCTCTAGCCAGC 1388 Query 53800 TGAGCTAATTCCCCAATCGG 53819 ||||||||| |||| |||| Sbjct 1387 TGAGCTAATCCCCCTTTCGG 1368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665475633057920