Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq564 210 3e-49 seq1779 149 7e-31 >seq564 Length=19258 Score = 210 bits (232), Expect = 3e-49 Identities = 1105/1739 (64%), Gaps = 50/1739 (3%) Strand=Plus/Plus Query 75222 TGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACAT 75281 |||| |||| ||||| |||| ||||||| | ||| || | ||| |||||| | Sbjct 16628 TGTTGCTGCGTGTCGCGCTCGGTATCCACGTTGGTGACCTTCAACGTGTGAAGGAGACGT 16687 Query 75282 ACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTA 75341 |||| | | || || || ||||| ||||| || |||||||| |||||||| || | Sbjct 16688 ACGAACTGCTTTCTCAGGGCTGGTTCACGCACGCCACCCCAACCCTTTTCAATGCCGGCA 16747 Query 75342 CACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACG 75401 | || |||||||||||| |||||||||| | || | ||||||||||| ||| | | Sbjct 16748 CTCCCCAACCGCAGATGTCGTCTTGCTTCCTTGTGGCGATGAAGGAGGACTCCATCGAAG 16807 Query 75402 GTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA 75461 | ||||| | || || | | | ||| | ||| ||| || || ||||| || Sbjct 16808 GCATCTACGATACCCTCAAGCAAGCTGCTCGCATCAGCAAGGCTGCCGGTGGTATCGGCC 16867 Query 75462 TGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACAAATGGTCAATC 75519 |||||||||| ||| || | | |||| || | || || || || || Sbjct 16868 TGCACATCCAC--TGTATCCGCAGCTCCGGCGCGTACATCAGTGGTACGAACGGCACGTC 16925 Query 75520 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGC 75579 | || || |||| | ||||| || | ||| ||| ||||| || || |||| | Sbjct 16926 CAACGGCCTTGTTCCCCTTCTTCGTGTGTGGAACAACACCGCGCGTTACGTGGATCAGG- 16984 Query 75580 GGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCA 75635 | |||| | ||||||| | |||| || ||| |||| || ||||| | || || Sbjct 16985 GTGGCGGCAAGCGCAAGGGTGCGTTCGCAGTGTACCTGGAGCCGTGGCACGGAGACATTT 17044 Query 75636 TGGAGTTCCTTGAGTTACGA--CTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCT 75693 | || ||| | | || || | |||| || | || || || | |||| | Sbjct 17045 TTGACTTCTT--ACTTCTGAAGCGCAACACTGGCAAGGATGAACAGCGTGCTCGAGACTT 17102 Query 75694 CTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATG 75753 || | || ||||| || ||| | ||||||||||| ||||| || | | || Sbjct 17103 GTTCTACGGGCTTTGGATCCCTGACTTGTTCATGAAGCGTGTTGAAAAGAACGAGAAGTG 17162 Query 75754 GTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTG 75812 | |||| | || || || || || ||| | || || ||| || ||||| | Sbjct 17163 GACTCTCATGGACCCCAACTCCGCTCCCGGCCTCGCTGATTGCTATGGC-GATGAGTTCG 17221 Query 75813 AAGCCCTCTACACAAAG-TATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCC 75871 | || | ||| || | || || ||||| | | | | ||| | | |||| Sbjct 17222 AGGCGTTGTAC-CAGCGCTACGAGACTGAGGGCCGCGGTATTAAGACCATTCAAGCCCAA 17280 Query 75872 GATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTAC 75931 || | ||| || || || | || |||| || || || || || || ||| | ||| Sbjct 17281 GAACTGTGGTTCGCGATCCTTGAGTCTCAGATTGAAACCGGCACCCCCTACATGTTGTAC 17340 Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 ||||||||||| ||||||||||| ||||||||||| ||||| || || ||| |||| || Sbjct 17341 AAGGATGCTTGCAACAAGAAGAGCAACCAAAAGAACTTGGGCACGATTAAGTGCTCCAAC 17400 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 || ||||| || ||| | |||||||| ||| ||| ||||| ||||| | || Sbjct 17401 CTCTGCACAGAGATTGTTGAGTACACGTCCCCGGACGAGGTTGCTGTGTGCAACCTTGCG 17460 Query 76052 TCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT 76111 || || || ||||| ||| || || ||||| | | || ||| || | | Sbjct 17461 TCGATTGCACTTCCTCGGTACGTGAACCTTGAGACAGGAAAGTTCGATCATCAGCGTTTG 17520 Query 76112 CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTAT 76171 | ||| ||||||||| || || | ||| ||| ||||| | || || || Sbjct 17521 TACGAAGTCACAAAGACGGTAGTGGTGAACTTGAACAAAGTGATTGATCGCAACTTCTAC 17580 Query 76172 CCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAA 76231 ||||| || || || || | || || | ||| |||| | || ||||| Sbjct 17581 CCCGTCGAAGAGGCCCGCCGCAGCAACTTCCGCCATCGCCCTGTTGGCCTTGGAGTTCAG 17640 Query 76232 GGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGA 76290 || | ||||| | || || | ||| || | | || | ||||| || | Sbjct 17641 GGCTTGGCGGACGCGTTCATCCTCATGCGCCTTC-CCTTCGCGAGCCCCGAAGCTCAGAA 17699 Query 76291 GATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATT 76350 | |||| | ||||| || || || || |||| ||| || | || || || | Sbjct 17700 GTTGAACGAGGAGATCTTCGAGACAATCTACTACGCGGGCCTTGAATCCAGCTGCGACAT 17759 Query 76351 GGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCT 76410 || | || | || | ||||| || || | || ||||| ||||||||||| | || Sbjct 17760 CGCCGCAGTGGACGGCCCGTATGAAACGTTCGCCGGATCTCCTGCGTCCCAAGGCATTCT 17819 Query 76411 TCAGTTTGATATGTGGG--AAGGTG-AAACCAAGCTCAACTACGACTGGGATGTTCTCAA 76467 |||||| || ||||||| ||| | ||||| | || ||||||| ||||| Sbjct 17820 TCAGTTCGACATGTGGGGTAAGCAGCCAACCAGCGGCCGCTGGGACTGGGCCTCCCTCAA 17879 Query 76468 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 76527 ||| || | || ||| | || ||| ||| | | || |||||||| || || Sbjct 17880 GGAGCGTGTGCAGCGTGTCGGTATCCGCAACTCCCTTCTCCTCGCCCCAATGCCCACCGC 17939 Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 |||||| | || ||| | || || || || ||||| ||||| | ||| | |||||||| Sbjct 17940 ATCCACCTCCCAGATCCTCGGCAACAACGAGTGCTTCGAACCCTTCACCTCGAACATCTA 17999 Query 76588 CCTGAGAAGAACCCTCGCAGGTGAGTT---TGTCATTGTCAACAAGCACCTCGTCAATGA 76644 ||| | | ||| |||||||| ||||| |||||||| |||| || || Sbjct 18000 CCTTCGCCGTGTGCTCAGCGGTGAGTTCCCTGTCA---TCAACAAGTACCTTGTGGTGGA 18056 Query 76645 CCTCAAGAAGATTGGTCTCTGGTCCAAGGATAT---GAAGGATCTCAT-GGTGAAAGCGG 76700 ||||| ||| ||| || ||| || ||||||| || | |||| ||| ||| Sbjct 18057 CCTCATCAAGCGTGGGCTGTGGACCGAGGATATTCGCAACCAGATCATCGGT----GCGA 18112 Query 76701 GTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAG 76760 || ||| ||||| ||| || ||||| || ||| | || ||| | | Sbjct 18113 ACGGCTCCGTTCAAGGGATCAACGAAATCCCGCTGGAGCTCAGAGAGCTGTACAAGATCG 18172 Query 76761 TGTGGGAAAT----CAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816 |||||||||| ||| || || ||||||||||||||||| ||||| | | Sbjct 18173 TGTGGGAAATTCGCCAA----AAGGACCTCATTGACATGGCCGCATCCCGTGGCAAGTAC 18228 Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC---CAAGCTC 76873 ||||||||| ||| ||| ||||| ||||| | | ||||| | | ||| | | ||| Sbjct 18229 ATTGATCAATCTCAGAGTTTGAATTTATTCCTCG--AGTCC-CCCAAGTCAAGCCAACTC 18285 Query 76874 TCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 | || ||||| | ||| | ||||| || || || || || || |||||||| || || Sbjct 18286 ACATCGATGCACTTTTACACTTGGAAGCAAGGACTGAAGACTGGTATGTACTACCTGCG 18344 >seq1779 Length=53708 Score = 149 bits (164), Expect = 7e-31 Identities = 306/445 (69%), Gaps = 15/445 (3%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||||||||||||||| ||||||| || || ||||| |||||||| ||||| Sbjct 28804 CTCCTTCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAG 28863 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| |||||||||| || || ||||| ||||| |||||| || Sbjct 28864 CTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAA 28923 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA-GCTCTTCAAGA 65245 || || || || || || ||||| |||||| || || | |||| | ||| | | ||| Sbjct 28924 CGAGCTGATCTCGCGTGACGAGGGCCTCCACACCGACTTCG-CGTGCATGCTGTACGAGA 28982 Query 65246 CTTTGCGTAATAGACCCACT-ACCGA--AAC-TATCCACGCCATCGTGAAAGAGGCGGTT 65301 | | | | || || | ||| | | |||| || ||| | || || || Sbjct 28983 -AGTACCTGGTGAACAAGCTGAGCGAGGAGCGCATCCGCGAGATCATTGGCGACGCCGTG 29041 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCT 65361 | ||| ||||| | |||||||| ||||| ||||| ||| ||||| |||||||| Sbjct 29042 GCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGCGTCTGATCGGAATGAACTCC 29101 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 || |||| || ||||||| |||| || |||| ||||| || | || | | | | Sbjct 29102 GATCTGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCT-GATCACGCTTG---G 29157 Query 65422 CCAC----CCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 |||| | |||| ||| ||||| || || ||||| ||||| | || |||| | Sbjct 29158 CCACGAGACGATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCA 29217 Query 65478 TGGGAAGACCAACTTCTTTGAGAAG 65502 || ||||| |||||||| |||||| Sbjct 29218 AGGCAAGACGAACTTCTTCGAGAAG 29242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552776737280