Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq564 87.8 5e-12 >seq564 Length=19258 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCA 155645 |||| ||||| || || || || ||| ||| | | | || |||| || |||||||| Sbjct 17467 CAATCGACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACG-TGTACTCAACAATCTCT 17409 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||| ||||| || | ||| || ||||| || ||||| ||||| || |||| ||| Sbjct 17408 GTGCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAA 17349 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 ||||||||||| | ||||| ||||| || || || ||||| | || || ||| | | Sbjct 17348 GCATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAAC 17289 Query 155766 CAGAGGTCACGGGCATTAAT 155785 || || || |||| | ||| Sbjct 17288 CACAGTTCTTGGGCTTGAAT 17269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471775057112272