Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1779 215 6e-50 seq564 134 2e-25 >seq1779 Length=53708 Score = 215 bits (238), Expect = 6e-50 Identities = 233/309 (75%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 |||||||||||| || ||||||||||||||||| ||| | |||| | | | ||| Sbjct 28666 GTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTTGAC 28607 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 || ||||||| || |||| |||||||| |||||||||||||||||||||||| || Sbjct 28606 GTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGATGCCGTCGCTGGCGGCGAAGAA 28547 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGT 869814 || |||| ||||||||| |||||||||||||||||| | |||| |||||| | Sbjct 28546 CGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCGTCGTTCAGCGCGTCCCAGTCCTTCAT 28487 Query 869815 GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACAT 869874 |||| || ||||| | |||||| ||||||| |||| |||||||| |||||| | Sbjct 28486 GTCGCTGCCCAGGTCGATCTCCTCCATCGTCCAGAACGAGCTCTCGGCCTCCTTGTACTT 28427 Query 869875 CTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAA 869934 || ||| | | | | ||| ||| |||||||| || ||||||| ||||| || |||| Sbjct 28426 CTTCCAGATGTCCGGATAGGTGATGGGGAAGAGCACGAAGCGGTGAGGGTTTTCACGCAG 28367 Query 869935 CAGGGGTTC 869943 ||| || || Sbjct 28366 CAGCGGCTC 28358 Score = 131 bits (144), Expect = 2e-24 Identities = 192/273 (70%), Gaps = 14/273 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| |||||| |||| |||||| ||||| |||||||||||| Sbjct 28947 CCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCGCGCTTC 28888 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| |||||| ||||| || || ||||||||||| || ||||| || Sbjct 28887 TTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCCTCAACCGCGGCGAAC 28828 Query 869300 CCGATGAGCCGCTCGGCAAAGG----TGTCGAGGCCCTCCTTGTTGATCCACTTCATCGC 869355 | | ||| |||||||| |||| |||||| |||||||| ||| || Sbjct 28827 GCAACGAGGCGCTCGGCGAAGGAGGTTGTCGA----------CTTGATCCAGCGCATGGC 28778 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 ||| || ||||| | | | || | ||| ||||| || ||| ||| | | ||| Sbjct 28777 CCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAGGCGCTGCTT 28718 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 |||| | ||| || ||||| |||||||| Sbjct 28717 CTCGGTGGTGTCGCGGATGTAGGTCTCGATCAG 28685 Score = 114 bits (126), Expect = 2e-19 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || | |||||| ||||| |||||||| | || |||||| Sbjct 29265 GCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATC 29206 Query 868751 AACTCCATCCACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACG 868808 | |||||| | ||| ||||| |||| | | | | | ||| || |||| Sbjct 29205 ATCTCCATGAAGTCGAAGGGGTTCTTGGCGCC--GAAAATCGTCTCGTGGCCAAGCGTGA 29148 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 ||||| ||||| || || ||||||||||||||| ||| || ||| |||||| |||| Sbjct 29147 TCAGCAGACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGA 29088 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 | || ||| || |||| |||| | ||||| ||||||||| | ||||| ||| | | Sbjct 29087 TCAGACGCACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAA 29028 Query 868929 TGATCT 868934 |||||| Sbjct 29027 TGATCT 29022 >seq564 Length=19258 Score = 134 bits (148), Expect = 2e-25 Identities = 188/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || ||||| ||||| |||| ||| | || || || | ||| || ||||||||||| Sbjct 16983 CTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGA 16924 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| || || | ||| ||||||| | ||| | ||| | | ||| Sbjct 16923 CGTGCCGTTCGTACCACTGATGTACGCGCCGGAGCTGCGGATACAGTGGATGTGCAGGCC 16864 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | |||| |||| | || || ||||| || ||||||||||| || Sbjct 16863 GATACCACCGGCAGCCTTGCTGATGCGAGCAGCTTGCTTGAGGGTATCGTAGATGCCTTC 16804 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||||| ||||||| |||| || ||||| ||||| | ||||| || | ||||| Sbjct 16803 GATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAGTGCC 16744 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGC 1630328 ||| ||||| || || || || || Sbjct 16743 GGCATTGAAAAGGGTTGGGGTGGC 16720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106954062075152