Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1779 210 3e-48 seq564 127 3e-23 >seq1779 Length=53708 Score = 210 bits (232), Expect = 3e-48 Identities = 214/277 (77%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||||||||| | | ||| || |||||||||| |||| ||||||||| | Sbjct 28632 AAGCAGCGGGCCTCGGGGATCTTGACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGC 28573 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||||||||||||||||||||| || || |||| ||||||||| ||||| ||||||||| Sbjct 28572 ACGATGCCGTCGCTGGCGGCGAAGAACGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCG 28513 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320 ||| | |||| | |||||| | ||||| ||| ||||||| |||||| ||||| Sbjct 28512 TCGTTCAGCGCGTCCCAGTCCTTCATGTCGCTGCCCAGGTCGATCTCCTCCATCGTCCAG 28453 Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT--CCGTTGGTAGCGGATGGGGAACA 796378 || ||| |||||||| |||||| ||| ||| || ||| | ||| ||||||||| | Sbjct 28452 AACGAGCTCTCGGCCTCCTTGTACTTCTTCCAGATGTCCG--GATAGGTGATGGGGAAGA 28395 Query 796379 GAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | || ||||| | ||||| || || ||||||||||| Sbjct 28394 GCACGAAGCGGTGAGGGTTTTCACGCAGCAGCGGCTC 28358 Score = 167 bits (184), Expect = 4e-35 Identities = 234/327 (72%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| |||||| ||| |||||| ||||| |||||||||||| Sbjct 28947 CCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCGCGCTTC 28888 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||||| ||||| || || ||||||||||| || ||||| || Sbjct 28887 TTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCCTCAACCGCGGCGAAC 28828 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| |||||||| || | ||| || |||||||| ||| |||||| Sbjct 28827 GCAACGAGGCGCTCGGCGAAGG-----AGGTTGTC-GACTTGATCCAGCGCATGGCCCAC 28774 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | |||| | ||| ||||| || ||| ||| | | ||||||| Sbjct 28773 TCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAGGCGCTGCTTCTCG 28714 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||| || |||||| ||||| || | ||| || || ||||||||| || Sbjct 28713 GTGGTGTCGCGGATGTAGGTCTCGATCAGCATGCTGTACGTTTCGCTGTGGATGTTCTCC 28654 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 || |||||||||||||| || |||||| Sbjct 28653 ATCGCGATCTGGAAGCCGTAGAAGCAG 28627 >seq564 Length=19258 Score = 127 bits (140), Expect = 3e-23 Identities = 189/266 (71%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || || ||||| |||| ||| | || || || | ||| |||||||||||||| Sbjct 16983 CTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGA 16924 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||| || || | ||| ||||| ||| ||| | ||| | | ||| Sbjct 16923 CGTGCCGTTCGTACCACTGATGTACGCGCCGGAGCTGCGGATACAGTGGATGTGCAGGCC 16864 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTT--TTCAGCGTCTCGTAGATGCCC 2073717 ||| || ||||| |||||| |||| || ||| || || || || ||||||||||| Sbjct 16863 GATACCACCGGCAGCCTTGCTGATG--CGAGCAGCTTGCTTGAGGGTATCGTAGATGCCT 16806 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 ||||| ||||| ||||||| ||| || ||||| ||||| | ||||| | | ||| Sbjct 16805 TCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAGTG 16746 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||||||| || || || || || Sbjct 16745 CCGGCATTGAAAAGGGTTGGGGTGGC 16720 Score = 123 bits (136), Expect = 4e-22 Identities = 358/544 (66%), Gaps = 14/544 (3%) Strand=Plus/Minus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| || || |||| |||||||| | ||||||| ||||||||||| |||||||| || || Sbjct 18384 GTCAACCGTGAACTTGATGGCGTCGACGGCAGGGCGGGTGCGCAGGTAGTACATACCAGT 18325 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA-TGGACTCGGCATTCGGGA 2069371 ||| || || | ||| | ||| ||||||||| |||| | | || | | | |||| Sbjct 18324 CTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTGAGTTGGCTTGACTTGGGGGA 18265 Query 2069372 CGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCA 2069431 | | | | | || | ||| || || | || | ||| || |||| Sbjct 18264 CTCGAG-GAATAAATTCAAACTCTGAGATTGATCAATGTACTTGCCACGGGATGCGGCCA 18206 Query 2069432 TGTCGATG--GTCACGCGGTTGGACACCT-CCCACACGGTCTTGAACAGGGCCTTGAGAT 2069488 |||| ||| ||| | |||| | | |||||||| ||||| |||| | |||| | Sbjct 18205 TGTCAATGAGGTC---CTTTTGGCGAATTTCCCACACGATCTTGTACAGCTCTCTGAGCT 18149 Query 2069489 GCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGT 2069548 | |||| | |||| | ||| || || || ||||| | ||| |||||| ||| Sbjct 18148 CCAGCGGGATTTCGTTG--ATC----CCTTGAACGGAGCCGTTCGCACCGATGATCTGGT 18095 Query 2069549 CGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGA 2069608 ||||| || |||||||| || ||| || | | | | || |||| ||||| Sbjct 18094 TGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGGTCCACCACAAGGTACTTGTTGA 18035 Query 2069609 CCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGC 2069668 || | || || || |||||| ||||| ||||||||| |||| | ||| Sbjct 18034 TGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAGATGTTCGAGGTGAAGGGTTCGA 17975 Query 2069669 ACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCA 2069728 | |||| ||||||| |||||||| || || | || |||||||| | || | ||| | Sbjct 17974 AGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCGGTGGGCATTGGGGCGAGGAGAA 17915 Query 2069729 GCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGC 2069788 | |||||||| | ||| | |||| || || |||| | ||||||||||||||| Sbjct 17914 GGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTGAGGGAGGCCCAGTCCCAGCGGC 17855 Query 2069789 CGCT 2069792 |||| Sbjct 17854 CGCT 17851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916006418990384