Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq781 118 7e-22 seq1631 93.3 3e-14 seq1639 89.7 3e-13 >seq781 Length=13536 Score = 118 bits (130), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 13074 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTC 13015 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 13014 CTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 12955 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || |||||||| |||| | | || Sbjct 12954 CTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAAGCGT 12895 Query 34945 CTTTC---CCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| | ||||| |||||||||||||||||||| Sbjct 12894 CTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 13302 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTC 13243 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 13242 CTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 13183 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || |||||||| |||| | || || Sbjct 13182 CTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATCGT 13123 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 13122 CTTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 13089 >seq1631 Length=42244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||||| || | || || ||||| | || ||||||||| ||||| ||||||| Sbjct 38327 TTCCTCCCCGCAGGCGGAGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCG 38268 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || |||| | || ||||| ||||| || || |||||||| || |||||||| ||| Sbjct 38267 CAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCG 38208 Query 34869 GCACCCCCTCCTTGTC 34884 | | ||||||||||| Sbjct 38207 GGATGCCCTCCTTGTC 38192 >seq1639 Length=27095 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| ||||| | || |||| | || Sbjct 128 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 69 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||||| Sbjct 68 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 10 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| ||||| | || |||| | || Sbjct 2945 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 2886 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 2885 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 2827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683845076464