Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1968 127 2e-23 seq2119 98.7 7e-15 >seq1968 Length=6703 Score = 127 bits (140), Expect = 2e-23 Identities = 239/348 (69%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| || ||||| ||||||||| | ||||| || | || | || || ||| | | Sbjct 1121 TTACCAGGCGATTGTCAAAATCTGCTCCTCCTAAGTGGGTGTCACCGCTGGTGGCTTTGA 1062 Query 282240 CTTGGAAAAGTCCAT--CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCAT 282297 ||| |||| | | | | | | ||||||||| |||||| || || || || | Sbjct 1061 CTTC--AAAGACGTTGGCGCCGATGGTCAAAAGAGTCACATCAAATGTGCCCCCTCCAAG 1004 Query 282298 ATCAAAAATAAGTACATTCA--TTTCT----TTGTCTTGGTTTTTATCAAGACCATACGC 282351 |||||| || || || | || | ||||| | |||||||||||||||| || Sbjct 1003 ATCAAAGATGAGCACGTCGCGCTTGCGATGATTGTCACCGATTTTATCAAGACCATAAGC 944 Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411 || |||||| || || || || || ||||| || | || | |||||| ||||| || Sbjct 943 AACAGCAGCGGCTGTGGGCTCGTTCATAATACTAATCACCTCAAGACCCGCAATAGCCCC 884 Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| |||||||| | ||| ||||| || || ||||| || || | |||||| Sbjct 883 GGCATCTTTGGTGGCTTGACGTTGGACGTCGTTGAAGTAGGCAGGCACCGTCACAACGGC 824 Query 282472 ATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 | | | ||||| |||||||| |||| ||| || ||||||||| Sbjct 823 TTTTTTGACTTCCTTTCCAATGTAAGTTTCTGCAGTGGCTTTCATTTT 776 Score = 114 bits (126), Expect = 1e-19 Identities = 236/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| || ||||| ||||||||| | ||||| || | || | || || ||| | | Sbjct 520 TTACCAGGCGATTGTCAAAATCTGCTCCTCCTAAGTGGGTGTCACCGCTGGTGGCTTTGA 461 Query 282240 CTTGGAAAAGTCCAT--CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCAT 282297 ||| |||| | | | | | | ||||||||| |||||| || || || || | Sbjct 460 CTTC--AAAGACGTTGGCGCCGATGGTCAAAAGAGTCACATCAAATGTGCCCCCTCCAAG 403 Query 282298 ATCAAAAATAAGTACATTCA--TTTCT----TTGTCTTGGTTTTTATCAAGACCATACGC 282351 |||||| || || || | || | ||||| | |||||||||||||||| || Sbjct 402 ATCAAAGATGAGCACGTCGCGCTTGCGATGATTGTCACCGATTTTATCAAGACCATAAGC 343 Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411 || |||||| || || ||||| || ||||| || | || | |||||| ||||| || Sbjct 342 AACAGCAGCGGCTGTGGGTTCGTTCATAATACTAATCACCTCAAGACCCGCAATAGCCCC 283 Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| |||||||| | ||| ||||| || || ||||| || || | |||||| Sbjct 282 GGCATCTTTGGTGGCTTGACGTTGGACGTCGTTGAAGTAGGCAGGTACTGTCACAACGGC 223 Query 282472 ATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 | | ||||| || || || ||| ||| || ||||||||| Sbjct 222 TGTTTTGACTTCCTTCCCGATGTAACTTTCTGCAGTGGCTTTCATTTT 175 >seq2119 Length=28796 Score = 98.7 bits (108), Expect = 7e-15 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || || || ||||| | ||||| || ||||||| | |||| | || | | |||| Sbjct 6865 ACCTTGAAGGGCCAGTGCTTCATGTCAGATTGAAGATCGGGGTCGTCGAACTTGCGACCA 6806 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | || || || || || | ||| ||||| || || | || | || | ||||| Sbjct 6805 ATCAGGCGCTTCGCGTCGAAGACAGTGTTGGTGGGGTTCATGGCGACCTGGTTCTTGGCC 6746 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||| |||| || | || | ||| || || |||||| || || || ||||| ||| Sbjct 6745 GCATCACCAACAAGGCGCTCGGACTCAGTGAAGCCAACATACGACGGGGTCGTGCGGTTA 6686 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 || || ||||| |||||||| ||||| | | || | | ||||| || || | Sbjct 6685 CCCTGGTCATTGGCAATAATCTCAACCTGGTCGTTCTTGAAGACACCAACGCAGGAGTAG 6626 Query 282854 GTTGTTCCTAAATCAATACCAATAGCA 282880 || || || |||||||||||||||||| Sbjct 6625 GTAGTGCCCAAATCAATACCAATAGCA 6599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740519639933856