Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq564 282 4e-71 seq1779 150 2e-31 seq781 100 3e-16 seq1639 91.5 1e-13 seq1631 82.4 7e-11 >seq564 Length=19258 Score = 282 bits (312), Expect = 4e-71 Identities = 1070/1648 (65%), Gaps = 56/1648 (3%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCC 148121 || |||||| || ||||||| |||||||| |||||||| |||| || ||| Sbjct 18236 TGATCAATGTACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTTTTGGCGAATTTCC 18177 Query 148122 CAGGCCGTCTTGTACAGCCGCTTGATATG-ATCGGGAATGCCGTCGATGCGCTGCACCGA 148180 || | ||||||||||| ||| | | ||||| | | || ||| | || || || Sbjct 18176 CACACGATCTTGTACAGCTCTCTGAGCTCCAGCGGGATTTC-GTTGATCCCTTGAACGGA 18118 Query 148181 GCCGCGGTGCGCA---AAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGAT 148237 |||| | |||| | ||||| ||||| || || || || | || ||| ||| Sbjct 18117 GCCG---TTCGCACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGAT 18061 Query 148238 CAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAG 148297 ||||| | | || |||| || | || | ||||| ||| |||||| || || || Sbjct 18060 GAGGTCCACCACAAGGTACTTGTTGATGACAGGGAACTCACCGCTGAGCACACGGCGAAG 18001 Query 148298 ATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | ||| || || ||||| || ||||||||||||| | ||||| | ||| | Sbjct 18000 GTAGATGTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGA 17941 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 ||| |||||||| || | || || |||||||| | |||| | | | Sbjct 17940 TGCGGTGGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTC 17881 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGT-GTCACGTT---CCACATGTCGTACT 148473 ||| || | |||||||||||| | | || ||| | | || |||||||||| ||| Sbjct 17880 CTTGAGGGAGGCCCAGTCCCAGCG-GCCGCTGGTTGGCTGCTTACCCCACATGTCGAACT 17822 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533 | |||||||| || || || || || ||| ||||| |||| | | || | Sbjct 17821 GAAGAATGCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGG 17762 Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593 | | |||||||| | || || | ||||||| || |||||| || | | ||| | Sbjct 17761 CGATGTCGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCA 17702 Query 148594 GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 | | || ||| || | || | |||| | | |||||||| || | || Sbjct 17701 ACTTCTGAGCTTCGGGGCTCGCGAAGGGAAGGCGCATGAGGATGAACGCGTCCGCCAAGC 17642 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGC 148712 |||| || || | ||||| || || || | |||| | |||| || |||| ||| Sbjct 17641 CCTGAACTCCAAGGCCAACAGGGCGATGGCGGAAGTTGCTGCGGCGGGC-CTCTTCGACG 17583 Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCT 148771 || ||| |||||| || || | |||| |||| | | ||| ||| |||||| | || Sbjct 17582 GGGTAGAAGTTGCGATCAATCACTTTGTTCAAGTTCAC-CACTACCGTCTTTGTGA--CT 17526 Query 148772 GCGCAGCAATTCAAA--ATCGTACTT----GTCATCTACGAT---GCATCGGTTCACGGC 148822 || | || | | |||| |||| ||| || | | | | | || | || Sbjct 17525 TCGTACAAACGCTGATGATCGAACTTTCCTGTC-TCAAGGTTCACGTACCGAGGAAGTGC 17467 Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 || || || || |||||||| || ||| ||||||| ||||||| || ||||| | Sbjct 17466 AATCGACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGT 17407 Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 ||| || ||| ||| || ||| ||||| ||||||||| |||||||| ||||||| || Sbjct 17406 GCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGC 17347 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCG 148999 |||||||||| |||||| || ||| ||||| | ||| | || | || ||||| Sbjct 17346 ATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCA 17287 Query 149000 ATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTA--GCGACCCTCCTGCTCGTATAAAGTA 149057 ||| || || || | | || | | || ||| ||||| |||||| Sbjct 17286 ---CAGTTCTTGGGCTTGAA--TGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTGG 17232 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGG---GCACTTGTGCGGG 149114 |||| | ||||||| | ||||| |||||||| |||| ||||| | | ||| ||| Sbjct 17231 TACAACGCCTCGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTG---GGG 17175 Query 149115 CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAG 149174 |||||| | |||| ||| | | || |||||||| |||| || || | ||| Sbjct 17174 TCCATGAGAGTCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAA 17115 Query 149175 AGCGCGTACATGAGGTCGCGCGCCTTGCAGT-CTTCGGCGCCCATGTTGCGGCGCAGGTT 149233 ||| |||| | | ||| || || || || | || ||| ||||||| ||| Sbjct 17114 AGCCCGTAGAACAAGTCTCGAGCAC-GCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAG 17056 Query 149234 GAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG 149293 | | | || ||||| ||||||||||||| | |||||| |||| ||| |||||||| Sbjct 17055 TAAGAAGTCAAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCG 16996 Query 149294 CTTGCCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTC 149350 ||||||| ||||| || |||| ||| | ||||||| |||| |||| | || | Sbjct 16995 CTTGCCGCCACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAAC 16936 Query 149351 AATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT-CGCACTTTGT 149409 || ||| ||| |||||||| ||| || ||| |||| | ||| || | || Sbjct 16935 AAGGCCGTTGGACGTGCCGTTCGTACCACTGATGTACGCGCCG-GAGCTGCGGATACAGT 16877 Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAG-TCGC-CGAGCGT 149467 | | || | |||||| || ||| | ||| |||| || |||| | || ||| || Sbjct 16876 GGATGTGCAGGCCGATACCACCGGCAGCCTTGCTGATG--CGAGCAGCTTGCTTGAGGGT 16819 Query 149468 CGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTG 149527 ||||||||| |||||| ||| |||||| | || || ||||| || |||| || Sbjct 16818 ATCGTAGATGCCTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTG 16759 Query 149528 CGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCT 149587 ||| | |||||||| ||| | ||| ||| ||||||| || || | ||| Sbjct 16758 CGGTTGGGGAGTGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGA 16699 Query 149588 CATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGAC 149647 | || ||||||| ||| ||| || | | |||| | | ||||| || | ||||| Sbjct 16698 AAGCAGTTCGTACGTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGAC 16639 Query 149648 GCGCATCAGCATATGCTGCGGTCGCTCC 149675 |||| || || |||||| || |||||| Sbjct 16638 ACGCAGCAACAAATGCTGGGGCCGCTCC 16611 >seq1779 Length=53708 Score = 150 bits (166), Expect = 2e-31 Identities = 546/838 (65%), Gaps = 56/838 (7%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| ||||| || ||||| || ||||| | | || || | | Sbjct 29260 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTC 29201 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| ||||| | ||| ||| | ||| ||||| | | | ||| Sbjct 29200 CATGAAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCG--TGGCCAAGCGTGATCAGC 29143 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCA-A 120527 || |||||||| || ||||| ||||||| | ||| | | |||||| || | || | Sbjct 29142 AGACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGA 29083 Query 120528 CGCCACCGGCAACGCCGACGT-GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586 ||| || || | ||| | || || ||||||||||| || |||| || || | | Sbjct 29082 CGC-ACGGGGAGCGC-GTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGA 29025 Query 120587 TGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAG---GC 120643 | || | || | || || ||||| | | | | ||| | |||||| || Sbjct 29024 TCTCGCGGATGCGCTCCTCGCTCAGCTTGTTCACCAGGTAC-TTC--TCGTACAGCATGC 28968 Query 120644 ACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGC 120703 |||| ||||| ||||| ||||||||||| ||||| |||||||||||| || || |||| Sbjct 28967 ACGCGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGC 28908 Query 120704 CGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACA 120763 | ||||| | ||| | |||| | |||| |||| | |||||||| |||||||| | Sbjct 28907 CAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGA 28848 Query 120764 CGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCA---ACGTCGCCGTCTTGCTGT 120820 |||||| || ||| || || || | ||||||||| | | || | || ||| Sbjct 28847 TGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTCGACTT----- 28793 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGT 120880 |||||| |||||||||||| ||||| | | ||| || ||| ||||| ||| | Sbjct 28792 -GATCCAGCGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCT 28734 Query 120881 TCAGCAGCATGTCGCGCTCGCCCTCCTCCGCAAT-CAGCTGATG--------GATGAGCA 120931 | ||| ||||| || ||| | | || |||| ||| |||| Sbjct 28733 CAAACAG------GCGCT---GCTTCTCGGTGGTGTCGCGGATGTAGGTCTCGATCAGCA 28683 Query 120932 GATTGTACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCG 120991 ||||| |||| |||| | | ||| ||| | || | ||| ||| | | | Sbjct 28682 TGCTGTACGTTTCGCTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGGG 28623 Query 120992 CCTCCAGCTCGGGCACC--GCCCGCTG-CATGTA---CTCGATAAGGTTAATATTCACGA 121045 | |||||| | | | | | | |||| | |||| ||||| | ||||| Sbjct 28622 C------CTCGGGGATCTTGACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGA 28569 Query 121046 TACTGTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCG 121105 | | |||| ||||||||||||||| || | ||||||||| ||||| ||||||||||| Sbjct 28568 TGCCGTCGCTGGCGGCGAAGAACGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCGTCGT 28509 Query 121106 TGAGCTTGTGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCA 121163 | ||| | | | | | |||| ||| || |||||||| |||||||| | |||| Sbjct 28508 TCAGC--GCGTCCCAGTCCTTCAT-GTCGCTGCCCAGGTCGATCTCCTCCATCGTCCA 28454 >seq781 Length=13536 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| |||||||| || Sbjct 13286 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTCCCG 13227 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 13226 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 13167 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| | | ||| || || | | | || || |||||||| || Sbjct 13166 ACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATCGTCTTCCCGGTCAGCGTC 13107 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 13106 TTCACGAAGATCTGCATG 13089 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| |||||||| || Sbjct 13058 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTCCCG 12999 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 12998 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 12939 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGA-CGGTGACG--GTTTTGCCGGTCAGA 133640 | | ||| | |||||| | | ||| || || | || || || || | || || Sbjct 12938 ACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAAGCGTCTTTCTGTCTGTGAGC 12879 Query 133641 GTTTTTACGAAAATCTGCATGGCTTATTTAT 133671 || ||||| || |||||||| || | || || Sbjct 12878 GTCTTTACAAAGATCTGCATCGCGTTTTGAT 12848 >seq1639 Length=27095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || ||| |||| ||||| ||||||||||| Sbjct 2930 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCA 2871 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | || || ||||||||||| || |||||||| |||||||| |||||| Sbjct 2870 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 2818 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || ||| |||| ||||| ||||||||||| Sbjct 113 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 54 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||| | || || ||||||||||| || |||||||| |||||||| ||||| Sbjct 53 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCT 2 >seq1631 Length=42244 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| |||||||||||| Sbjct 38295 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCC 38236 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || | || || ||||||||||| || |||||||| |||||||| |||||| Sbjct 38235 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 38183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483407167533440