Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1779 89.7 5e-13 >seq1779 Length=53708 Score = 89.7 bits (98), Expect = 5e-13 Identities = 329/501 (66%), Gaps = 17/501 (3%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 ||||| ||||||||||| |||||| || ||| || | | ||||||||| | Sbjct 28766 AAGGCGGAGTGGGCCATGCGCTGGATCAAG---TCGACAACCTCCTTCGCCGAGCGCCTC 28822 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895 || || ||||| || || ||| | || ||||| ||||| || | |||| || | Sbjct 28823 GTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGG 28882 Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955 | || | ||| | ||||| ||||| || ||| |||||| |||||||||| ||| Sbjct 28883 CTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGAC 28942 Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTA 47015 || || || ||||| ||||| ||||| | ||| ||| | | || | || | Sbjct 28943 GAGGGCCTCCACACCGACTTCGCGTGCATGCTGTACGAGAAGTACCTGGTGAACAAGCTG 29002 Query 47016 AACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTT 47074 | | ||| |||| ||| || || | || || ||| ||||| |||||||| | Sbjct 29003 AGCGAGGAGCGCATCCGCGAG-ATCATTGGCGACGCCGTGGCGATCGAGAAGGAGTTCAT 29061 Query 47075 TACTGCG--GCGCTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAAT 47130 ||||| ||||| ||||| || | || | || |||||| | | ||| ||| | | | Sbjct 29062 --CTGCGACGCGCTCCCCGTGCGTC-TGATCGGAATGAACTC-CGATCTGATGGCCCAGT 29117 Query 47131 ATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA-AATATTTT-AA 47188 | || ||||| || ||||| |||||| || | ||| || || ||| | ||||| Sbjct 29118 ACATCGAGTTCGTTGCGGACCGTCTGCTGATCACGCTTGGCCA--CGAGACGATTTTCGG 29175 Query 47189 TGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTT 47248 || || || || || || ||| | | || || || | ||||| || || || || Sbjct 29176 CGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAGGCAAGACGAACTTCTT 29235 Query 47249 CGAGAAACGAGTCGGAGAGTA 47269 |||||| ||||| ||||| Sbjct 29236 CGAGAAGAAGGTCGGCGAGTA 29256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597759564160