Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1779 334 1e-85 seq564 134 2e-25 >seq1779 Length=53708 Score = 334 bits (370), Expect = 1e-85 Identities = 414/561 (74%), Gaps = 8/561 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||||||| || || ||||||||| ||| | | Sbjct 28358 GAGCCGCTGCTGCGTGAAAACCCTCACCGCTTCGTGCTCTTCCCCATCACCTATCCGGAC 28417 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | | |||| || |||||||| ||| || ||||| |||||| ||||||| Sbjct 28418 ATCTGGAAGAAGTAC-AAGGAGGCCGAGAGCTCGTTCTGGACGATGGAGGAGATCGACCT 28476 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||| |||||| ||||||||||||||| ||||||||||| Sbjct 28477 GGGCAGCGACATGAAGGACTGGGACGCGCTGAACGACGACGAGCGCCACTTCATCAAGCA 28536 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 | |||| || || || |||||||||||| ||||||||| |||||||| |||| |||| Sbjct 28537 CATCCTTGCGTTCTT-CGCCGCCAGCGACGGCATCGTGCTTGAGAACCTCGCCGAGCGCT 28595 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || ||| | | || ||||| || | || ||||| ||||||||||| || | Sbjct 28596 TCATGACCGACGTCAAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCGATGG 28655 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||| ||||| ||| | |||||||| |||||| || ||| | || Sbjct 28656 AGAACATCCACAGCGAAACGTACAGCATGCTGATCGAGACCTACATCCGCGACACCACCG 28715 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | | ||| ||| || ||||| ||| | || | | | ||||| || | Sbjct 28716 AGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAGT 28775 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| ||| |||||||| || |||| ||| |||||||| ||||| | || Sbjct 28776 GGGCCATGCGCTGGATCAA-GTCGACAACCTC----CTTCGCCGAGCGCCTCGTTGCGTT 28830 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 ||||| || ||||||||||| || || ||||| |||||| ||||||| ||||| ||||| Sbjct 28831 CGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGGCTGAAGAA 28890 Query 1456255 GCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| ||||| || || Sbjct 28891 GCGCGGCCTGATGCCTGGCCT 28911 Score = 104 bits (114), Expect = 3e-16 Identities = 186/263 (71%), Gaps = 8/263 (3%) Strand=Plus/Plus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 ||||||| | ||| ||||| | ||||||||| ||||| || |||| |||| || ||| Sbjct 29022 AGATCATTGGCGACGCCGTGGCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGC 29081 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 || ||||| |||||| || || ||| ||||||||| || || || || ||||| Sbjct 29082 GTCTGATCGGAATGAACTCCGAT-CTGATGGCCCAGTACATCGAGTTC-GTTGCGGACCG 29139 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA--ACCCGTTCCCATG 1456698 ||||| |||| ||| || ||| | | | ||| || | | |||| ||| | Sbjct 29140 TCTGCTGATCACGCTTGGCCACG-AGACG-ATTTTCGG-CGCCAAGAACCCCTTCGACTT 29196 Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTA 1456757 |||||| ||||||| || | |||||||| ||||| |||||| || |||||||| Sbjct 29197 CATGGAGATGATCTCCCTTCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 29256 Query 1456758 CGCCAAGGCCGGCGTCACCGCCA 1456780 | ||||||||||| ||| ||| Sbjct 29257 CCAGAAGGCCGGCGTGACCTCCA 29279 >seq564 Length=19258 Score = 134 bits (148), Expect = 2e-25 Identities = 192/268 (72%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || || || || || || ||||||||||| || | ||||||| ||||| ||||| || Sbjct 16720 GCCACCCCAACCCTTTTCAATGCCGGCACTCCCCAACCGCAGATGTCGTCTTGCTTCCTT 16779 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 ||| ||||||| || || ||||| |||||||| || || |||||||| || | | Sbjct 16780 GTGGCGATGAAGGAGGACTCCATCGAAGGCATCTACGATACCCTCAAGCAAGCTGCTCGC 16839 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACA--CAAGG--TGCGCGCCGCGGG 260094 ||| |||||| ||||| || ||||| | ||||| || | | ||| | | || Sbjct 16840 ATCAGCAAGGCTGCCGGTGGTATCGG----CCTGCACATCCACTGTATCCGCAGCTCCGG 16895 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 ||| ||| | || || |||||| ||||||||||||||| ||| | ||||| || | Sbjct 16896 CGCGTACATCAGTGGTACGAACGGCACGTCCAACGGCCTTGTTCCCCTTCTTCGTGTGTG 16955 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| ||||| ||||| || ||| Sbjct 16956 GAACAACACCGCGCGTTACGTGGATCAG 16983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177593604653472