Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq781 113 4e-20 seq1631 93.3 4e-14 seq1639 87.8 2e-12 >seq781 Length=13536 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 13281 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAA 13222 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 13221 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 13162 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||| | || ||||| || || |||| || ||||| Sbjct 13161 CTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCAC 13102 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 13101 GAAGATCTGCAT 13090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 13053 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAA 12994 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 12993 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 12934 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTAC---CCGTCAAAGTTTT 35721 | | |||||| || || ||||| | || | ||| || | | || | || || Sbjct 12933 CTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTT 12874 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 12873 TACAAAGATCTGCAT 12859 >seq1631 Length=42244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || ||||| |||||| || |||||||| || || | || || | || ||||||||| Sbjct 38301 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGC 38242 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 || |||||||| |||| ||||||||||||| || | || |||||||||| |||||| Sbjct 38241 TTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 38183 >seq1639 Length=27095 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| || || | || ||||||||||| || || || Sbjct 2925 CTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAA 2866 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||||||||||||| || | || |||||||||| |||||| Sbjct 2865 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 2818 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| || || | || ||||||||||| || || || Sbjct 108 CTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAA 49 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCT 35651 |||| ||||||||||||| || | || |||||||||| ||||| Sbjct 48 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450780887620480