Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq781 109 6e-19 seq1639 96.9 4e-15 seq1631 96.9 4e-15 >seq781 Length=13536 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 13307 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 13248 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| |||| |||||||| || ||||| ||||| || Sbjct 13247 CCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 13188 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| |||| || || || || | | Sbjct 13187 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCA 13128 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 13127 ATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 13079 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 13020 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| |||| |||||||| || ||||| ||||| || Sbjct 13019 CCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 12960 Query 134616 TTTTCTTGAATTTT 134629 || || || || || Sbjct 12959 TTGTCCTGGATCTT 12946 >seq1639 Length=27095 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 |||||||| ||| || | ||| ||||| |||||||| ||||| || ||||||||||| || Sbjct 2961 TCCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 2902 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | ||| | || || ||||| ||||| || || |||| |||||||| || || | Sbjct 2901 CAGC-GTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGG 2843 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | ||||| || || || || || || Sbjct 2842 GGATGCCCTCCTTGTCCTGGATCTT 2818 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | ||| || | ||| ||||| |||||||| ||||| || ||||||||||| ||| Sbjct 143 CCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 84 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | || || ||||| ||||| || || |||| |||||||| || || || Sbjct 83 AGC-GTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 25 Query 134606 TATGCCTTCTTTTTCTTGAAT 134626 ||||| || || || || || Sbjct 24 GATGCCCTCCTTGTCCTGGAT 4 >seq1631 Length=42244 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 134482 CCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT 134541 || ||||||| | || || | ||||||||| | ||| || ||||| || |||||||||| Sbjct 38330 CCATTCCTCCCCGCAGGCGGAGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGT 38271 Query 134542 CGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGG 134601 | ||| ||| | || || ||||| ||||| ||||| |||| |||||||| || | Sbjct 38270 CCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCG 38211 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||| ||||| || || || || || || Sbjct 38210 GCGGGATGCCCTCCTTGTCCTGGATCTT 38183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505384147765120