Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1779 114 4e-20 >seq1779 Length=53708 Score = 114 bits (126), Expect = 4e-20 Identities = 413/630 (66%), Gaps = 17/630 (3%) Strand=Plus/Plus Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGC-ATCCCGACATCTACGACATGTACAA--ACGACAA 443327 || ||||| | |||||| | || | |||| ||||||| | | |||||| | | | | Sbjct 28385 CGCTTCGTGCTCTTCCCCAT-CACCTATCCGGACATCTGGAAGAAGTACAAGGAGGCCGA 28443 Query 443328 GTGGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAAC 443387 | | | ||| ||||| ||||||||||| || || || ||| || || ||| || Sbjct 28444 GAGCTC--GTTCTGGACGATGGAGGAGATCGACCTGGGCAGCGACATGAAGGACTGGGAC 28501 Query 443388 GAACGACTATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCG 443447 | || | | | | | || ||| | ||| |||| |||| | || ||||| || | Sbjct 28502 G--CGCTGAACGA-CGACGAGCGCCACTTCATCAAGCACATCCTTGCGTTCTTCGCCGCC 28558 Query 443448 AGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATG-GTAGTGTACAC 443506 |||||||| ||||| |||||| || | ||| ||| | || || | | | Sbjct 28559 AGCGACGGCATCGTGCTTGAGAACCTCGCCGAGCGCTTC-ATGACCGACGTCAAGATCCC 28617 Query 443507 CGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTA 443566 ||||||||||| |||||||| ||||| ||| ||||||||||| ||| ||| || Sbjct 28618 CGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCGATGGAGAACATCCACAGCGAAACGTA 28677 Query 443567 CAGTCAGTTGATCAAGACACTAATTCCGAACGAAGAC-GAACAGCGGTCCATCTTCTCAT 443625 ||| | ||||| |||| ||| |||| | || || ||| | | | || Sbjct 28678 CAGCATGCTGATCGAGAC-CTACATCCGCGACACCACCGAGAAGCAGCGCCTGTTTGAGG 28736 Query 443626 CGTTCATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAAC 443685 || || ||| | || ||||| ||| | ||||| | | ||| || || Sbjct 28737 CGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAGTGGGCCATGCGCTGGATC-AAG 28795 Query 443686 GAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGT 443745 || || ||| ||||| |||||| || || || || || | ||| || || | || | Sbjct 28796 TCGACAACCTC--CTTCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCT 28853 Query 443746 TTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTG 443805 || ||||||||| || |||||||||||| |||| ||||| || || |||| || || Sbjct 28854 TTTCCGGCAGCTTCTGC-TCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTC 28912 Query 443806 ACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTT 443865 ||||| ||||| |||||| || |||||||| | || ||||||||| || | Sbjct 28913 ACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTCCACACCGACTTCGCGTGCATG 28972 Query 443866 CTCTACACCAAACACATCGTGCACAAGCTG 443895 || ||| || || | ||| |||||||| Sbjct 28973 CTGTACGAGAAGTACCTGGTGAACAAGCTG 29002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588290089147920