Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq564 233 2e-56 seq1779 143 3e-29 seq394 93.3 5e-14 >seq564 Length=19258 Score = 233 bits (258), Expect = 2e-56 Identities = 1111/1738 (64%), Gaps = 48/1738 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 || || |||||||| || ||||| |||||||| ||||| | ||| | ||||| || | | Sbjct 18344 CGCAGGTAGTACATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTG 18285 Query 110423 AGCTTG---GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATG 110479 || | | ||| | | ||||| | | ||| | |||| ||| ||| ||| |||||| Sbjct 18284 AGTTGGCTTGACTTGGG-GGACT--CGAGGAATAAATTCAAACTCTGAGATTGATCAATG 18228 Query 110480 AAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTG 110539 | || || ||| ||||| ||||||| ||||| ||||||||| || | Sbjct 18227 TACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTTTTGGCGAATTTCCCACACGATC 18168 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 || || | ||| || ||||| || ||| || | ||| || ||| Sbjct 18167 TTGTACAGCTCTCTGAGCTCCAGCGGGATTTCGTTGATCCCTTGAACGGAGCCGTTCGC- 18109 Query 110600 TTCACC-ATGAGATCCTTC---ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 ||| |||| | || ||||||| || ||| || ||| ||| ||||||| Sbjct 18108 ---ACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGGTCCAC 18052 Query 110656 GACGAGGTGCTTGTTGACAATGACA---AACTCACCTGCGAGGGTTCTTCTCAGGTAGAT 110712 || |||| |||||||| ||||| |||||||| ||| | | |||||||| Sbjct 18051 CACAAGGTACTTGTTGA---TGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAGAT 17995 Query 110713 GTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 110772 ||| | ||| | ||||| ||||| || || || || | ||| || | |||||| || || Sbjct 17994 GTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCGGT 17935 Query 110773 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAG 110832 |||||||| || | | ||| ||| || | ||| || | || |||||||| Sbjct 17934 GGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTGAG 17875 Query 110833 AACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTGAAGCAC 110889 ||||||| || | ||||| | ||| |||||||||| |||||||| | Sbjct 17874 GGAGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTACCCCACATGTCGAACTGAAGAAT 17815 Query 110890 CCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC 110949 ||||||||||| ||||| || | || |||||||| | || | || | || | || Sbjct 17814 GCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGGCGATGTC 17755 Query 110950 ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTT 111009 ||||| | || ||| |||| || || || || ||||| | |||| || || Sbjct 17754 GCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCAACTTCTG 17695 Query 111010 GGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAA 111068 ||||| | || | | || ||| | || || | ||||| | || |||| Sbjct 17694 AGCTTCGGGGCTCGCGAAGG-GAAGGCGCATGAGGATGAACGCGTCCGCCAAGCCCTGAA 17636 Query 111069 CACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAA 111128 | || | |||| ||| | || || | || || || || ||||| || | Sbjct 17635 CTCCAAGGCCAACAGGGCGATGGCGGAAGTTGCTGCGGCGGGCCTCTTCGACGGGGTAGA 17576 Query 111129 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 111188 | || | ||||| ||| ||| | || || ||||||||| ||| | | Sbjct 17575 AGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTTGTGACTTCGTACAAAC 17516 Query 111189 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 111248 | || ||| || | | ||||| || || ||| ||||| || || || || | Sbjct 17515 GCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGAAGTGCAATCGACGCAA 17456 Query 111249 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGG 111308 ||||| ||||| ||| ||| |||||||| | ||| ||||| || | ||||| Sbjct 17455 GGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGGTTGG 17396 Query 111309 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 | | ||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| | Sbjct 17395 AGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTACA 17336 Query 111369 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGG 111428 ||||||||| || || || || |||| || | || || || ||| | || || Sbjct 17335 ACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTCTTGGG 17276 Query 111429 CTGGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGCTTCA 111484 || | ||||| | | | || ||||| | |||||| | || ||| | || || Sbjct 17275 CTTG---AATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTG-GTACAACGCCTCG 17220 Query 111485 AACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543 ||||| || ||| || || | ||| || || || || || | |||| ||| Sbjct 17219 AACTCATC-GCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGTCCA 17161 Query 111544 -TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 || | ||| ||||| ||||||||||| | ||| || ||||| || | || | Sbjct 17160 CTTCTCGTTCTT-TTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAACA 17102 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG--TCGTAACTCAAGGAACTCCAT 111660 |||| | || || || | || |||| | || || | | ||| || | Sbjct 17101 AGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGT--AAGAAGTCAAA 17044 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGC 111717 || || ||||||| ||||| || || ||||||| | ||||| || | ||| | Sbjct 17043 AATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCACC 16984 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 |||| || || ||||| ||| ||| | || ||||| | |||| || || | || Sbjct 16983 CTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGA 16924 Query 111778 TTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 111835 || || || || | || |||| | | || ||| |||||||||| Sbjct 16923 CGTGCCGTTCGTACCACTGATGTACGCGCCGGAGCTGCGGATACA--GTGGATGTGCAGG 16866 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || ||||| || || ||| ||| | ||| | | | || || | ||||| || Sbjct 16865 CCGATACCACCGGCAGCCTTGCTGATGCGAGCAGCTTGCTTGAGGGTATCGTAGATGCCT 16806 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| | || | |||||||||| |||||||||||| || || Sbjct 16805 TCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAGTG 16746 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || |||||||| |||||||| || ||||| ||||| || || || | | ||||| Sbjct 16745 CCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAGCAGTTCGTAC 16686 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 |||||| ||| | || ||| | ||||||| |||| ||||| |||| |||| Sbjct 16685 GTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGACACGCAGCAACA 16628 >seq1779 Length=53708 Score = 143 bits (158), Expect = 3e-29 Identities = 313/459 (68%), Gaps = 15/459 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || |||||| |||||| |||||||| ||||| || | |||| || | ||||| Sbjct 29256 TACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCATG 29197 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG----GTGGCACCCCAACTTGTTTGAGGAG 122486 ||||| || || ||||| ||| |||| | ||||| | | | || | || || Sbjct 29196 AAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGGC---CAAGCGTGATC-AGCAG 29141 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||| |||| || |||| ||||||| || |||| || |||||||| ||||| || Sbjct 29140 ACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGACG 29081 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 ||||| ||||| |||||||| | ||||| ||| | || || || | ||| | Sbjct 29080 CACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCTC 29021 Query 122607 GTGGATA-GTT--TCGGT-AGTGGGTCTATTACGCAAAGTCTTGAAGAGC-TCCACGGCA 122661 | |||| | | ||| | || || | | | | ||| | | ||| | |||| | Sbjct 29020 GCGGATGCGCTCCTCGCTCAGCTTGTTCACCAGGTACT-TCTCGTACAGCATGCACG-CG 28963 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||||| ||||| || || || || || || || |||||| || || ||| Sbjct 28962 AAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGC 28903 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 || || || |||||||||| ||| | || | |||||| ||||| |||||||| ||| Sbjct 28902 ATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCC 28843 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || || ||||||| ||||| |||||||||||| Sbjct 28842 TCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAG 28804 >seq394 Length=4795 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| |||||| ||||||||||||||| ||||||||||| | || Sbjct 1566 GCTCGTATAGTGTAGTGGTTATCACTCTGGACTTTGAATCCAGAAACCCTGGTTCGAGTC 1625 Query 145342 CAGGTAGGAGCTTT 145355 |||||| |||| || Sbjct 1626 CAGGTATGAGCATT 1639 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| |||||| ||||||||||||||| ||||||||||| | || Sbjct 2064 GCTCGTATAGTGTAGTGGTTATCACTCTGGACTTTGAATCCAGAAACCCTGGTTCGAGTC 2123 Query 145342 CAGGTAGGAGCTTT 145355 |||||| |||| || Sbjct 2124 CAGGTATGAGCATT 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014289497600