Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq564 246 4e-60 seq1779 188 9e-43 >seq564 Length=19258 Score = 246 bits (272), Expect = 4e-60 Identities = 1114/1740 (64%), Gaps = 52/1740 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || ||||| || || |||||||| | || | ||||| || | Sbjct 18344 CGCAGGTAGTACATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTG 18285 Query 117897 AACTTGGAGAGGGTTGG---ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 117953 | |||| | |||| ||| | | ||| | |||| ||| || |||||||| ||| Sbjct 18284 AG-TTGGCTTGACTTGGGGGACT--CGAGGAATAAATTCAAACTCTGAGATTGATCAATG 18228 Query 117954 AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG----ATTTCCCACAC 118009 | || || || ||||| ||||| | ||||| ||| ||||||||||| Sbjct 18227 TACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTT----TTGGCGAATTTCCCACAC 18172 Query 118010 AGTCCTGTAGAGGT-TCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCAC 118068 || |||| || | ||| | || | ||||| || ||| ||| | ||| || Sbjct 18171 GATCTTGTACAGCTCTCTGAGCTCCAGC-GGGATTTCGTTGATCCCTTGAACGGAGCCGT 18113 Query 118069 CCGCCTTGACC-ATGAGATCCTTC---ATATCCTTTGACCAGAGACCAATCTTTTTGAGA 118124 ||| ||| |||| | || ||||||| | ||| || ||| ||| |||| Sbjct 18112 TCGC----ACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGG 18057 Query 118125 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 118184 ||| |||| || | ||| |||| ||| |||||||| ||| || | || ||| Sbjct 18056 TCCACCACAAGGTACTTGTTGATGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAG 17997 Query 118185 ATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 118244 || || | ||| | || || |||||||| ||||| || | ||| |||| ||||| || Sbjct 17996 ATGTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCG 17937 Query 118245 GTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTG 118304 |||||||| || || | ||||||| ||| |||| ||| | | || |||||| Sbjct 17936 GTGGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTG 17877 Query 118305 AGAGCGTCCCAGTCGTAGTTGA-GCT--TTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 || | | ||||||| || | ||| ||| || | |||||| || ||||| || Sbjct 17876 AGGGAGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTACCCCACATGTCGAACTGAAGA 17817 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 || ||||||||||| || ||||| | || || ||||| ||||| || || | || | Sbjct 17816 ATGCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGGCGATG 17757 Query 118422 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481 ||| |||| | || ||| | |||| || ||||| || || || | |||| | Sbjct 17756 TCGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCAACTTC 17697 Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 118541 | || ||| | | || | || || | || || | ||||| | || || Sbjct 17696 TGAGCTTCGGGGCTCGCGAAGGGAAGGCGCATGAGGATGAACGCGTCCGCCAAGCCCTGA 17637 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGAT 118599 || || ||||||| |||||||| | | || || | || || || ||||| | Sbjct 17636 ACTCCAAGGCCAACAGGGCGATGGCGGAAGTT--GCTGCGGCGGGCCTCTTCGACGGGGT 17579 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 118659 | || || | ||| || || | || | || || |||||||| ||| | | Sbjct 17578 AGAAGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTTGTGACTTCGTACA 17519 Query 118660 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 118719 | | ||| || | | ||||| || || ||| |||||| || || |||| Sbjct 17518 AACGCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGAAGTGCAATCGACG 17459 Query 118720 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGT 118779 | || || ||||||| ||| ||| |||||||| | ||| || ||||| | || Sbjct 17458 CAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGGT 17399 Query 118780 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 118839 | || | |||||| ||||||||||||||||| || ||| |||| || |||||||||| Sbjct 17398 TGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGT 17339 Query 118840 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGG 118899 | | |||||| || || || || || | || |||| || || || ||| | || Sbjct 17338 ACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTCTT 17279 Query 118900 CAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTA-CTTTGTGTAGAGGGCTTCA 118958 ||| | | || | | || ||||| |||||| | || ||| | || || Sbjct 17278 GGGCTTGAATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTG-GTACAACGCCTCG 17220 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 ||||| || || | || | ||| || || || | ||| | ||||| ||| Sbjct 17219 AACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGTCCAC 17160 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078 | | || ||||| ||||||||||| | ||| |||||||| ||| | |||| | Sbjct 17159 TTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAACAAG 17100 Query 119079 TCCCGACAGCGAGCTTCTTCATCC---CCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135 || || ||| || | ||||||| || ||| | || || ||||| | Sbjct 17099 TCTCG--AGCACGC-TGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCAAAA 17043 Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 119192 || || |||||||||| ||||||||||| |||| | ||||| || | ||| || Sbjct 17042 ATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCACCC 16983 Query 119193 TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGAT 119252 || | || || | ||| ||| ||| | |||||||| | |||| | || | ||| Sbjct 16982 TGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGAC 16923 Query 119253 TGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCT-CTGACATCGTGGATGTGCATA 119309 ||| || || || | || |||| | | | ||| | || | ||||||||||| Sbjct 16922 GTGCCGTTCGTACCACTGATGTACGCGCCGGA---GCTGCGGATACAGTGGATGTGCAGG 16866 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA--CTCCGTGAGACTGCCGTAGATCC 119367 || ||||| || || ||| || |||| ||| | | |||| | ||||||| | Sbjct 16865 CCGATACCACCGGCAGCCTTGCTGA--TGCGAGCAGCTTGCTTGAGGGTATCGTAGATGC 16808 Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTG 119427 | ||||| ||||| |||| | || | |||||||| |||||| || || ||| | Sbjct 16807 CTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAG 16748 Query 119428 TACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGT 119487 | || || ||||| || ||||| || ||||| ||||| || || || | | |||| Sbjct 16747 TGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAGCAGTTCGT 16688 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 | |||||| || ||| ||| | |||| ||||||| || ||| |||| |||| Sbjct 16687 ACGTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGACACGCAGCAACA 16628 >seq1779 Length=53708 Score = 188 bits (208), Expect = 9e-43 Identities = 369/536 (69%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||| ||||| || | | | ||| ||||||| Sbjct 29256 TACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCATG 29197 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTG-CTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || |||||||| | | |||| | || | |||| | | || ||||| Sbjct 29196 AAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGG-CCAAGCGTGATCAGCAGACG 29138 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| ||| |||| ||||||| | |||| ||||||||||| ||||| || Sbjct 29137 GTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGACGCAC 29078 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| |||||||| ||||||| || |||| || || | | ||| || | Sbjct 29077 GGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCTCGCG 29018 Query 129967 AATGGTCTCCGTGC-CAGGTCTATTGCGCA---AAGTCTTGAAGAGT-TCCACGGCAAAC 130021 ||| |||| || ||| | | || || | ||| | | || | |||| | || Sbjct 29017 GATGCGCTCCTCGCTCAGCT-TGTTCACCAGGTACTTCTCGTACAGCATGCACG-CGAAG 28960 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || |||||| ||||||||||| ||||| || || || |||||| || || ||||| Sbjct 28959 TCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGCATC 28900 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||||| |||||| || | || || ||| || |||||||| ||||| Sbjct 28899 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCCTCA 28840 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || |||||||||| ||| ||||| || ||||| || | | | | ||| | Sbjct 28839 ACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGA---GGTTGTCGACTTGATCCAGCGC 28783 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || ||||||| |||||| || ||| || || | |||| |||||| ||||| || Sbjct 28782 ATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAG 28727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618417760127360