Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq564 246 4e-60 seq1779 132 6e-26 >seq564 Length=19258 Score = 246 bits (272), Expect = 4e-60 Identities = 1112/1739 (64%), Gaps = 50/1739 (3%) Strand=Plus/Plus Query 104232 TGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACAT 104291 |||| |||| || || ||||||| || | | ||| || | ||| |||||| | Sbjct 16628 TGTTGCTGCGTGTCGCGCTCGGTATCCACGTTGGTGACCTTCAACGTGTGAAGGAGACGT 16687 Query 104292 ACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTA 104351 |||| | | || || || ||||| ||||| || |||||||| |||||||| || | Sbjct 16688 ACGAACTGCTTTCTCAGGGCTGGTTCACGCACGCCACCCCAACCCTTTTCAATGCCGGCA 16747 Query 104352 CACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACG 104411 | || ||| || ||||| |||||||||| | || | ||||||||||| ||| | | Sbjct 16748 CTCCCCAACCGCAGATGTCGTCTTGCTTCCTTGTGGCGATGAAGGAGGACTCCATCGAAG 16807 Query 104412 GTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA 104471 | ||||| | || || | | | ||| | ||| ||| || || ||||| || Sbjct 16808 GCATCTACGATACCCTCAAGCAAGCTGCTCGCATCAGCAAGGCTGCCGGTGGTATCGGCC 16867 Query 104472 TGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAAATGGTCAATC 104529 |||||||||| ||| || | | ||| || | || || || || || Sbjct 16868 TGCACATCCA--CTGTATCCGCAGCTCCGGCGCGTACATCAGTGGTACGAACGGCACGTC 16925 Query 104530 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGC 104589 | || || |||| | ||||| || | ||| ||| ||||| || || |||| | Sbjct 16926 CAACGGCCTTGTTCCCCTTCTTCGTGTGTGGAACAACACCGCGCGTTACGTGGATCAGGG 16985 Query 104590 TG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCAT 104646 || ||| || ||||| | ||||||| || || ||||| ||||||| || || | Sbjct 16986 TGGCGGCAAGCGCAAGGGTGCGTTCGCAGTGTACCTGGAGCCGTGGCACGGAGACATTTT 17045 Query 104647 GGAGTTC---CTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATC 104702 || ||| ||| | ||| |||| || | || || || |||| || || Sbjct 17046 TGACTTCTTACTTCTGAAGCG---CAACACTGGCAAGGATGAACAGC-GTGCTCGAGACT 17101 Query 104703 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 104762 | |||| || || ||||| || || | ||||||||| | ||||| ||| | || | Sbjct 17102 TGTTCTACGGGCTTTGGATCCCTGACTTGTTCATGAAGCGTGTTGAAAAGAACGAGAAGT 17161 Query 104763 GGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 104822 || ||||| | || || || || || ||| | ||| | || || ||||| | Sbjct 17162 GGACTCTCATGGACCCCAACTCCGCTCCCGGCCTCGCTGATTGCTATGGCGATGAGTTCG 17221 Query 104823 AAGCCCTTTACACAAAG-TACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCC 104881 | || | ||| || | |||||| || || || | | | ||| | | ||| Sbjct 17222 AGGCGTTGTAC-CAGCGCTACGAGACTGAGGGCCGCGGTATTAAGACCATTCAAGCCCAA 17280 Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941 || ||||| || || || ||||||| | || || || || || |||||| | ||| Sbjct 17281 GAACTGTGGTTCGCGATCCTTGAGTCTCAGATTGAAACCGGCACCCCCTACATGTTGTAC 17340 Query 104942 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAT 105001 || || || || ||| | ||||| || |||||||| ||||| ||| ||| | ||||| Sbjct 17341 AAGGATGCTTGCAACAAGAAGAGCAACCAAAAGAACTTGGGCACGATTAAGTGCTCCAAC 17400 Query 105002 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 105061 ||||| ||||| || | || | || | || ||| |||||||| ||||| || Sbjct 17401 CTCTGCACAGAGATTGTTGAGTACACGTCCCCGGACGAGGTTGCTGTGTGCAACCTTGCG 17460 Query 105062 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 105121 || || || || || ||| ||| | | |||||| | || ||| || | | Sbjct 17461 TCGATTGCACTTCCTCGGTACGTGAACCTTGAGACAGGAAAGTTCGATCATCAGCGTTTG 17520 Query 105122 CACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 105181 ||||||| || || || || ||| | |||| ||| |||||| | || || ||| Sbjct 17521 TACGAAGTCACAAAGACGGTAGTGGTGAACTTGAACAAAGTGATTGATCGCAACTTCTAC 17580 Query 105182 CCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241 ||||| || || || || | | || || || |||| || || |||||| Sbjct 17581 CCCGTCGAAGAGGCCCGCCGCAGCAACTTCCGCCATCGCCCTGTTGGCCTTGGAGTTCAG 17640 Query 105242 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301 || | ||||| | ||||| || |||| | || | | |||||| || | Sbjct 17641 GGCTTGGCGGACGCGTTCATCCTCATGCGCCTTCCCTTCGCGAGCCCCGAAGCTCAGAAG 17700 Query 105302 ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTG 105361 | || | | || || ||||| || || |||| | ||||| | || | || | Sbjct 17701 TTGAACGAGGAGATCTTCGAGACAATCTACTACGCGGGCCTTGAATCCAGCTGCGACATC 17760 Query 105362 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 105421 || | || || || || |||||||| || | || ||||| || || ||||| | ||| Sbjct 17761 GCCGCAGTGGACGGCCCGTATGAAACGTTCGCCGGATCTCCTGCGTCCCAAGGCATTCTT 17820 Query 105422 CAATTTGATATGTGGG--AAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAG 105478 || || || ||||||| ||| | | | ||| | || ||||||| | |||||| Sbjct 17821 CAGTTCGACATGTGGGGTAAGCAGCCAACCAGCGGCCGCTGGGACTGGGCCTCCCTCAAG 17880 Query 105479 GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCC 105538 || || | || ||| | || ||| || ||| | || |||||||| || || Sbjct 17881 GAGCGTGTGCAGCGTGTCGGTATCCGCAACTCCCTTCTCCTCGCCCCAATGCCCACCGCA 17940 Query 105539 TCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 |||||| | || ||| | || || || || ||||| ||||||| ||| |||||||||| Sbjct 17941 TCCACCTCCCAGATCCTCGGCAACAACGAGTGCTTCGAACCCTTCACCTCGAACATCTAC 18000 Query 105599 CTGAGAAGAACCCTCGCGGGAGAGTT---TGTGATTGTCAACAAGCATCTCGTGGATGAC 105655 || | | ||| || ||||| ||| | |||||||| | || |||| ||| Sbjct 18001 CTTCGCCGTGTGCTCAGCGGTGAGTTCCCTGTCA---TCAACAAGTACCTTGTGGTGGAC 18057 Query 105656 CTCAAAGAGATTGGTCTCTGGTCCAAGGATAT---GAAGGATCTCAT-GGTGAAAGCGGG 105711 |||| || ||| || ||| || ||||||| || | |||| ||| ||| Sbjct 18058 CTCATCAAGCGTGGGCTGTGGACCGAGGATATTCGCAACCAGATCATCGGT----GCGAA 18113 Query 105712 TGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA-AGTTGTACCGCACAG 105770 || ||| ||||| || || | ||| || | | ||| || ||||| | | Sbjct 18114 CGGCTCCGTTCAAGGGATCAACGA-AATCCCGCTGGAGCTCAGAGAGCTGTACAAGATCG 18172 Query 105771 TTTGGGAAAT----CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 105826 | |||||||| ||| ||||| ||||||||||||||||| ||||| | | Sbjct 18173 TGTGGGAAATTCGCCAA----AAGGACCTCATTGACATGGCCGCATCCCGTGGCAAGTAC 18228 Query 105827 ATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTC---CAAGCTC 105883 ||||||||| ||| ||| ||||| | ||| | | ||||| | | ||| | | ||| Sbjct 18229 ATTGATCAATCTCAGAGTTTGAATTTATTCCTCG--AGTCC-CCCAAGTCAAGCCAACTC 18285 Query 105884 TCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 105942 | || |||||| | |||| ||||||| | || || || || || ||||| ||||| || Sbjct 18286 ACATCGATGCACTTTTACACTTGGAAGCAAGGACTGAAGACTGGTATGTACTACCTGCG 18344 >seq1779 Length=53708 Score = 132 bits (146), Expect = 6e-26 Identities = 177/246 (72%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| ||| || ||||| || ||| | || |||| || || || ||| ||||| Sbjct 28715 GAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAG 28774 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGT---TCCTTTGCTGAGCGACTCTTCGCA 94818 ||||| ||| ||| | |||||| ||||| || ||||| ||| | || Sbjct 28775 TGGGCCATGCGCTGGATC------AAGTCGACAACCTCCTTCGCCGAGCGCCTCGTTGCG 28828 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 || || |||||||| |||||||| || || ||||||| | || | ||||| ||| Sbjct 28829 TTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGGCTGAAG 28888 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||| || || ||||| || ||| ||||||||||||||| ||||| ||||||||||| Sbjct 28889 AAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGC 28948 Query 94939 CTCCAC 94944 |||||| Sbjct 28949 CTCCAC 28954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244352045440