Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2119 178 4e-39 seq1968 111 5e-19 >seq2119 Length=28796 Score = 178 bits (196), Expect = 4e-39 Identities = 484/734 (66%), Gaps = 13/734 (2%) Strand=Plus/Plus Query 349196 ACCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGAT 349255 || ||||| || || ||||| || ||||| || || || |||| ||| | | || || Sbjct 6597 ACTGCTATTGGTATTGATTTGGGCACTACCTACTCCTGCGTTGGTGTCTTCAAGAACGAC 6656 Query 349256 CGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTT 349315 | || || || ||||| ||||| || |||||| | || || || || || |||| || Sbjct 6657 CAGGTTGAGATTATTGCCAATGACCAGGGTAACCGCACGACCCCGTCGTATGTTGGCTTC 6716 Query 349316 ACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAA 349375 || || | ||||| | |||||||| | || || || || | || || || | Sbjct 6717 ACTGAGTCCGAGCGCCTTGTTGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCACC 6776 Query 349376 AATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAA--ATCTACA 349432 || || || || || || ||||| || |||||| | ||||| | ||| |||| || Sbjct 6777 AACACTGTCTTCGACGCGAAGCGCCTGATTGGTCGCAAGTTCGAC-GACCCCGATCTTCA 6835 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 |||||| | || || | || || | || || || || || || || Sbjct 6836 --ATCTGACATGAAGCACTGGCCCTTCAAGGTCACCGTCAAGGAGGGC---AAGCCCGTT 6890 Query 349493 ATTGAGGTTGAATATA--AAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 || ||||||| || | || | || ||| | | || |||||||| ||| | | Sbjct 6891 GTTCAGGTTGAGTACATGAATGAGACCAAGACC--TTCGCCCCCGAAGAGATTAGCGCGA 6948 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 |||| | || |||||||| | |||||| || || | ||||| | || || | | Sbjct 6949 TGGTGCTGCAAAAGATGAAGGAGACTGCTGAGGCCTACCTCGGTGAGAAGGTCACCAAGG 7008 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 | || || ||||| || ||||| || ||||| |||||||| || ||||| ||||| | Sbjct 7009 CCGTCATCACTGTCCCTGCCTACTTCAATGACTCCCAGCGTCAGGCCACAAAGGATGCCG 7068 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | |||| | || | | || || | || || || || ||||||||||| || |||| Sbjct 7069 GTCTCATTTCCGGCCTTGAAGTGCTGCGCATCATCAACGAGCCCACTGCTGCCGCTATTG 7128 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | || || | || || | || || || | || | || ||||| ||| | |||| Sbjct 7129 CCTACGGCATGGACAAGAAGACCGATGGTGAGCAGAACGTCCTCATTTTCGATCTTGGTG 7188 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | ||||| || ||||| | || || || | || | || || || || || || || | Sbjct 7189 GCGGTACGTTCGATGTGACGCTTCTGACCATCGACAACGGTATCTTCGAGGTAAAGGCCA 7248 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | |||||||| || ||||||||||| || ||||||||||| || | ||| | |||| Sbjct 7249 CCGCTGGTGACACCCATCTTGGTGGTGAGGATTTTGATAACCGCATGGTTGACTACTTTG 7308 Query 349911 TTAAAGAATTTAAG 349924 ||||||| ||| Sbjct 7309 CCCAAGAATTCAAG 7322 >seq1968 Length=6703 Score = 111 bits (122), Expect = 5e-19 Identities = 461/721 (64%), Gaps = 25/721 (3%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | || || || ||||| || || || | ||| ||| || || |||||||| Sbjct 824 GCCGTTGTGACGGTGCCTGCCTACTTCAACGACGTCCAACGTCAAGCCACCAAAGATGCC 883 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||||| | | || | || || || || || ||||| || || || || Sbjct 884 GGGGCTATTGCGGGTCTTGAGGTGATTAGTATTATGAACGAGCCCACAGCCGCTGCTGTT 943 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTA------TTCTTATTTTTGAT 349783 || ||||| ||||||||||| ||||| | | || | || || |||||| Sbjct 944 GCTTATGGTCTTGATAAAATCGGTGACAATCATCGCAAGCGCGACGTGCTCATCTTTGAT 1003 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAA--TTTTTGAAG 349841 | || || || || |||||||| | || | || | | | | || | ||||||| Sbjct 1004 CTTGGAGGGGGCACATTTGATGTGACTCTTTTGACCATCG--GCGCCAACGTCTTTGAAG 1061 Query 349842 TTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTT 349901 | ||||| || ||||| || || | || |||| ||||||||| ||||| || || Sbjct 1062 TCAAAGCCACCAGCGGTGACACCCACTTAGGAGGAGCAGATTTTGACAATCGCCTGGTAA 1121 Query 349902 CGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATA---TTG--GAGATAATCC 349956 | || | ||||| ||| ||| || || | ||| ||| | ||| Sbjct 1122 AGTTTTACACGGAGGAATTCAAGAAG-AAGAATAATGGGAAAGACTTGTCGAGCTC-TCC 1179 Query 349957 TAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC 350016 | | | | | |||||| | ||| || |||||||| ||||| || | || ||| | Sbjct 1180 TCGTTCCGTTCAGCGCCTACGCGTTGCTTGCGAACGTGCAAAGCGCACCCTTTCGTCTGC 1239 Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTT----CAT 350072 || ||| || | || || |||||| | || ||| || ||| |||| || Sbjct 1240 CACGCAAGCCACGATCGAGATTGATGCCCTCTTTGAC----AATATTGATTTTACCGCAA 1295 Query 350073 CTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATC 350132 | || || || ||||| || ||||| | || |||| || |||| | |||| | | Sbjct 1296 CCATCACTCGAGCTCGCTTCGAAGAGCTGTGCGTGGACCTCTTTAAAAAAACATTTATCC 1355 Query 350133 CTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTT 350192 | ||||| || | |||| || || ||| ||| | | || || || || Sbjct 1356 CAGTGGAGCGCGTGCTGCAAGACGCCAAGATGAACAAGCGTGTTGTAGACGATGTTGTCC 1415 Query 350193 TAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATG 350252 | ||||| || || ||||||||||| |||||||| ||| | | |||||||| ||| | Sbjct 1416 TCGTTGGGGGCTCCACACGTATTCCCAAAGTTCAGCAGCTGGTCTCTGAGTTCTTTGGGG 1475 Query 350253 GCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTC 350312 | |||| || | | || || |||||||||| |||| ||||| |||||||| | Sbjct 1476 GTAAAGCACTGAACAAAAGTATCAACGCAGATGAAGCGATTGCGTATGGGGCTGCTGTAC 1535 Query 350313 A 350313 | Sbjct 1536 A 1536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515210601571568