Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq564 214 2e-50 seq493 123 3e-23 seq386 107 2e-18 seq1779 100 3e-16 >seq564 Length=19258 Score = 214 bits (236), Expect = 2e-50 Identities = 517/771 (67%), Gaps = 10/771 (1%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTG 53237 ||| ||| || | || |||| ||||| | |||||||||| || ||| | || |||| Sbjct 16617 GCCCCAGCATTTGTTGCTGCGTGTCGCGCTCGGTATCCACGTTGGTGACCTTCAA-CGTG 16675 Query 53238 TCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGT 53297 | ||||||||||| | | || | || ||||||||||| |||||||| | Sbjct 16676 TGAAGGAGACGTACGAACTGCTTTCTCAGGGCTGGTTCACGCACGCCACCCCAACCCTTT 16735 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 |||| || || || || || ||||||||| |||||||| |||||||||||||| | Sbjct 16736 TCAATGCCGGCACTCCCCAACCGCAGATGTCGTCTTGCTTCCTTGTGGCGATGAAGGAGG 16795 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 |||| ||||| ||||||||||| || |||||| | ||| | |||| |||| | | Sbjct 16796 ACTCCATCGAAGGCATCTACGATACCCTCAAGCAAGCTGCTCGCATCAGCAAGGCTGCCG 16855 Query 53418 GTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 |||||||||| | ||| | | | | | |||| |||| | |||| || || Sbjct 16856 GTGGTATCGGCCTGCACATCCACTGTA--TCCGCAGCTCCGGCGCGTACATCAGTGGTAC 16913 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 ||||||| || | || | || || | || || || | |||||||| || || || Sbjct 16914 GAACGGCACGTCCAACGGCCTTGTTCCCCTTCTTCGTGTGTGGAACAACACCGCGCGTTA 16973 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| | |||||||| || ||||||||||| ||||||| | ||||| ||||||||||| Sbjct 16974 CGTGGATCAGGGTGGCGGCAAGCGCAAGGGTGCGTTCGCAGTGTACCTGGAGCCGTGGCA 17033 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 || |||||| | || || | ||| | || || | || || ||| || Sbjct 17034 CGGAGACATTTTTGACTTCTTACTTCTGAAGCGCAACACTGGCAAGGATGAACAGCG-TG 17092 Query 53656 C-CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG 53713 | || ||| |||| ||| | || ||||| || ||| | |||||| | || || ||| Sbjct 17093 CTCGAGACTTGTTCTAC-GGGCTTTGGATCCCTGACTTGTTCATGAAGCGTGTTGAAAAG 17151 Query 53714 GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGT 53773 ||||| ||||| || ||| ||| ||| ||||||||| | | ||| || Sbjct 17152 AACGAGAAGTGGACTCTCATGGACCCCAACTCCGCTCCCGGCCTCGCTGATTGCTATGGC 17211 Query 53774 GAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 || ||||| | | | |||| | | |||| | |||||||| | |||| | Sbjct 17212 GATGAGTTCGAGGCGTTGTACCAGCGCTACGAGACTGAGGGCCGCGGTATTAAGACCATT 17271 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 | || | || | ||| || ||||| || ||| | || || || || || ||| Sbjct 17272 CAAGCCCAAGAACTGTGGTTCGCGATCCTTGAGTCTCAGATTGAAACCGGCACCCCCTAC 17331 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||| ||||||||| | |||| ||||||||||||| |||||| | ||| Sbjct 17332 ATGTTGTACAAGGATGCTTGCAACAAGAAGAGCAACCAAAAGAACTTGGGC 17382 Score = 136 bits (150), Expect = 4e-27 Identities = 315/459 (69%), Gaps = 27/459 (6%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||| ||| | || |||||||| ||||| || || | |||||| | |||||| Sbjct 17905 CGCAACTCCCTTCTCCTCGCCCCAATGCCCACCGCATCCACCTCCCAGATCCTCGGCAAC 17964 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGCAGGTGA 55602 |||||| ||||| || | ||| | ||||||||||| ||||| | | ||| ||||| Sbjct 17965 AACGAGTGCTTCGAACCCTTCACCTCGAACATCTACCTTCGCCGTGTGCTCAGC-GGTGA 18023 Query 55603 GTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAA 55659 ||| |||| ||||||||| |||| || |||||| ||| ||||| Sbjct 18024 GTTCCCTGTC---ATCAACAAGTACCTTGTGGTGGACCTCATCAAGCGTGGGCTGTGGAC 18080 Query 55660 CCCGCAGAT---CAAGACGGAT-AT-TGTGCGGAACGGGGGGTCCGTCCA--GAATC-TG 55711 | | | || ||| | ||| || |||| |||| || ||||| || | ||| Sbjct 18081 CGAGGATATTCGCAA-CCAGATCATCGGTGC-GAAC---GGCTCCGTTCAAGGGATCAAC 18135 Query 55712 GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 || || || ||| |||| ||| | ||| || |||||||| |||| || ||| Sbjct 18136 GAAATCCCGCTGGAGCTCAGAGAGCTGTACAAGATCGTGTGGGAAATTCGCCAAAAGGAC 18195 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 || ||||||||| || ||||| |||||| || || || ||| | |||| | Sbjct 18196 CTCATTGACATGGCCGCATCCCGTGGCAAGTACATTGATCAATCTCAGAGTTTGAATTTA 18255 Query 55832 TTCATGGAGAATCCTTCA---CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 ||| | ||| ||| || | ||||| | | ||||||||||||||| |||||| Sbjct 18256 TTCCTCGAG--TCCCCCAAGTCAAGCCAA-CTCACATCGATGCACTTTTACACTTGGAAG 18312 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGC 55927 | ||||| ||||| ||||||||||| ||||| |||||| Sbjct 18313 CAAGGACTGAAGACTGGTATGTACTACCTGCGCACCCGC 18351 >seq493 Length=95943 Score = 123 bits (136), Expect = 3e-23 Identities = 205/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCAT---CCTTGCCACCTGCCAGCCGCGTTCCA 152082 |||||||||||||| ||| | ||||| | |||| || || |||||| || || Sbjct 59229 CGCGTGAAGATGTAACGG---CCCGCCGCGTGGTCCTTACCGCCCTGCAGCCGGGTACCG 59173 Query 152083 AACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| ||| ||| |||| | ||||||||| | |||||| || | ||| || | Sbjct 59172 AACTGGCCATCCTGCTGCAGGATGGGGAGGTTGTTCGAGCCCACAAAGTCCTGCGCAAGG 59113 Query 152143 TTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATG 152202 ||| ||||| || ||| ||| || |||||||| ||||| | ||||| | || | Sbjct 59112 GCCACGATCGTCGCCACCAGCGACGCCTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACG 59053 Query 152203 TATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA 152262 || || |||| |||||| ||||| ||| | || ||||||| ||||| || | | | Sbjct 59052 TAACCAGCCAGCTGCGCAACCTTGATGGACTTCACCAGGTTCCGCTTGAAGCACGAGAAG 58993 Query 152263 ATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCT 152317 | |||||||||||| || || | |||||||| ||| || || || |||| Sbjct 58992 AGCACCTTGCGCTGCCCAGGCTTGAGGCCGTCCACAACGCTCGGGATGGACCGCT 58938 Score = 116 bits (128), Expect = 4e-21 Identities = 307/459 (67%), Gaps = 26/459 (6%) Strand=Plus/Minus Query 117148 GAACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTA 117207 ||||||||| ||||| || | | || |||| ||| | |||||| | ||||| ||||| Sbjct 59383 GAACCCAGTGCCGATGCCAGCCGTCCCGTTCACCAGCACCATCGGAATCACAGGGACGTA 59324 Query 117208 GAACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTG-AG--CACCGCATTGTC 117264 | | |||||||| ||| |||||||| || |||| || ||||| ||| Sbjct 59323 GTAGAAGGGCTCCACGCTCAGGCCGTCGTC------GTCCTTGTAGTCCACCGTGAAGTC 59270 Query 117265 AC--TCG-GATCGAATATGTTCTTGGTCCACGGTGCT-AGGCGAGTGAAAATGTAACGAG 117320 ||| | | | | | | || | ||||| | ||||| ||||| |||||||| Sbjct 59269 GTCGTCGCGGTGGTACA-GCAGGCGGGCGGCGGTGGTCAGGCGCGTGAAGATGTAACG-- 59213 Query 117321 AGCTTGCAGCAT---CCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCA 117377 || || || | |||| || || || || |||||||| || ||| | ||| || Sbjct 59212 -GCCCGCCGCGTGGTCCTTACCGCCCTGCAGCCGGGTACCGAACTGGCCATCCTGCTGCA 59154 Query 117378 AGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGA 117437 || | |||||||| | ||||||||||| || || | | || ||||| | | Sbjct 59153 GGATGGGGAGGTTGTTCGAGCCCACAAAGTCCTGCGCAAGGGCCACGATCGTCGCCACCA 59094 Query 117438 GGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCA 117497 | |||||| || ||||| ||||| | ||||| | ||||| || |||||||| || | Sbjct 59093 GCGACGCCTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACGTAACCAGCCAGCTGCGCAA 59034 Query 117498 CCTTCATGTCTGACGTCA---GGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGAC 117554 |||| ||| ||| ||| ||||| ||||| ||| | | | |||||||||||| | Sbjct 59033 CCTTGATG---GACTTCACCAGGTTCCGCTTGAAGCACGAGAAGAGCACCTTGCGCTGCC 58977 Query 117555 TTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 ||||| || || ||| | ||| ||||| || |||| Sbjct 58976 CAGGCTTGAGGCCGTCCACAACGCTCGGGATGGACCGCT 58938 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 118152 CCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACA 118211 || |||||| || | | | ||||| || || ||| ||||||| || ||||| || || | Sbjct 58331 CCATCACCTTCTTAAGGCTCGCGTCGCGCACATTGAGCGGCTTGCCACGCAGGGGGAATA 58272 Query 118212 CGCCAAACTTGTCACGGCCCA-CAACGCTCAAGCCGGCAATAGCA-AGGGCCTTCGCCGA 118269 ||||||| || ||| || || ||| || || || | ||| ||||||||||| || Sbjct 58271 CGCCAAAGAAATCCCGGTCCTTCACCGC-CAGCCCAGCCGT-GCACAGGGCCTTCGCGGA 58214 Query 118270 GTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGC 118329 ||| |||||||| | ||| || ||||| | |||| | | || ||| || || Sbjct 58213 GTCGCCCTCGGTTAGAATGAGTGTGCAGCGTGCGCTGTGCTTTCCGCCCGCCTCGTTCGC 58154 Query 118330 ATCATCCAGCTTCGGAACGCC 118350 || ||||||||||||| ||| Sbjct 58153 GTCGTCCAGCTTCGGAATGCC 58133 >seq386 Length=26907 Score = 107 bits (118), Expect = 2e-18 Identities = 242/361 (67%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 124673 AATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCC 124732 |||||| |||| || ||| || ||||| || ||| ||||| || |||||||| || Sbjct 13355 AATCTTTTGCGTGACGAACGTGGCGCCGCGACGGGGAGATTCGTGATTAAACAGAATACC 13296 Query 124733 AGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAG 124792 | || || || ||||| | ||| |||||||| | || ||||| || | | || Sbjct 13295 GTTGGTAGCGAAGATACCGTAGGCCTCACGGTAGTTGATAGTAATCCAGTAAGCGTACAG 13236 Query 124793 CTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTG 124852 ||||| || | |||||||| ||||||||||| ||||| | || | || | | | Sbjct 13235 CTTGGCGACTGCGTAGGGGCTACGGGGGTAGAAGGGGGTCGTCTCCGTCTGAGGAATCTC 13176 Query 124853 CTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTTTGAAATAGA 124912 ||| | ||| || ||| |||||| || || || ||||| ||| | | ||| || Sbjct 13175 CTGGACCTTGCCGTACAGCTCCGAGGTGGAGGCTTGGTAGAACTTGCAGGTGTCAAT-GA 13117 Query 124913 ATTCGTTTG-ACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATTGGCGG 124971 |||| | || || || || | | | ||||| || | ||| || | |||| Sbjct 13116 GACCGTTGGCTCGGATCGCGTCGAGCAGCTTTAGGGTGCCGACGGCATCTGTCTGAGCGG 13057 Query 124972 TATACTCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTTGTACACCT 125031 | ||||| ||| || || |||| ||||| || ||||||||| | |||||||| | || Sbjct 13056 TGTACTCAGGCATGTCGAAGGACACCTTCACGTGCGACTGGGCAGCCAGGTTGTAAATCT 12997 Query 125032 C 125032 | Sbjct 12996 C 12996 >seq1779 Length=53708 Score = 100 bits (110), Expect = 3e-16 Identities = 527/820 (64%), Gaps = 31/820 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || |||||| ||| || || ||||| ||||| |||| | ||||| ||||||| Sbjct 29256 TACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCATG 29197 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGC-CATGAGGCG 74581 ||||||| |||||||| || ||| |||| | || | |||| | ||| || || || Sbjct 29196 AAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGGCCAAGC-GTGATCAGCAGACG 29138 Query 74582 ATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCA 74641 ||||| || || | |||||||| | ||| | | | ||| ||||| || ||| Sbjct 29137 GTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGAC-GCA 29079 Query 74642 CGGC-AGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAA--GC----CCATTGGACAA 74694 ||| || || ||| ||| ||||| |||| | |||| | || ||| || | Sbjct 29078 CGGGGAGCGCGTCGCAGATGAACTCCTTCTCGA--TCGCCACGGCGTCGCCAATG----A 29025 Query 74695 TCTTGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGA---GTAAAGCGT-CAC 74749 ||| | | ||| | | | || ||| | | ||||| ||| ||| | ||| Sbjct 29024 TCTCGCGGATG-CGCTCCTCGCTCAGCTTGTTCACCAGGTACTTCTCGTACAGCATGCAC 28966 Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 | | || || || ||| || || | |||| || || || || | ||||| Sbjct 28965 G-CGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCC 28907 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||| || || |||||||||| ||| ||||||| |||||| || |||||||| Sbjct 28906 AGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGAT 28847 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCA 74929 ||| || || || || || || ||||| | ||||| | | || | ||||| Sbjct 28846 GCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTCGACTTGATCCA 28787 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACA-GTATCGATCGCTTGGAAGA 74988 | ||||| || || || || | || ||||||| || |||||||| | || | Sbjct 28786 GCGCATGGCCCACTCCGCCTTCCGCTGGAT-GCAGGGAATCGTCTCGATCGCCTCAAACA 28728 Query 74989 GGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 ||| |||||| || || || | | || |||| | |||||| || Sbjct 28727 GGCGCTGCTTCTCGGTGGTGTCGCGGATGTAGGTCTCGATCAGCATGCTGTACGTTTCGC 28668 Query 75049 AATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 || || ||| | ||| |||| | ||||||| | || ||||| | |||| Sbjct 28667 TGTGGATGTTCTCCATCG-CGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTTG 28609 Query 75108 ACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 || || | |||| || | ||| ||||| | ||||||||||| |||||||| Sbjct 28608 ACGTCGGTCATGAAGCGCTC--GGCGAGGTTCTCAAGCACGATGCCGTCGCTGGCGGCGA 28551 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCT 75225 | || || || | ||||| ||||||||||| ||||| | || |||||| |||| Sbjct 28550 AGAACGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCGTCGTTCAGCGCGTCCCAGTCCT 28491 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| ||| | ||| || |||||||| | ||||||||| Sbjct 28490 TCATGTCGCTGCCCAGGTCGATCTCCTCCATCGTCCAGAA 28451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200568508800