Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq493 172 6e-38 seq781 152 6e-32 seq1779 111 2e-19 seq386 111 2e-19 seq1639 107 2e-18 seq1631 91.5 2e-13 >seq493 Length=95943 Score = 172 bits (190), Expect = 6e-38 Identities = 314/453 (69%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||||||||| || ||| | |||||||||||||||| |||||||||||| | | | Sbjct 58938 AGCGGTCCATCCCGAGCGTTGTGGACGGCCTCAAGCCTGGGCAGCGCAAGGTGCTCTTCT 58997 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 | ||| ||||| ||||||| || ||| ||||| ||||||||| | || ||||| Sbjct 58998 CGTGCTTCAAGCGGAACCTGGTGAAGTCCATCAAGGTTGCGCAGCTGGCTGGTTACGTCT 59057 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||||| | || || |||||||||||||||||||| || || || || ||||| Sbjct 59058 CCGAGCACTCTGCGTACCACCACGGCGAGGCGTCGCTGGTGGCGACGATCGTGGCCCTTG 59117 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||| ||||||| || | || ||||| | | || ||| ||| ||||| || | Sbjct 59118 CGCAGGACTTTGTGGGCTCGAACAACCTCCCCATCCTGCAGCAGGATGGCCAGTTCGGTA 59177 Query 32201 CCCGGCTCGCCGGTGGCAAGG---ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCT-C 32256 ||||||| || || |||| | || ||| | ||||||||||||||| || || Sbjct 59178 CCCGGCTGCAGGGCGGTAAGGACCACGCGGCGGG---CCGTTACATCTTCACGCGCCTGA 59234 Query 32257 GCACCTTCGACGCGCAAGATTTTCGACC-CGTCG--GACGATGCGGTGCTCAAGTACAAT 32313 |||| || | ||| | | | | ||| || || ||| ||||| | ||||| Sbjct 59235 CCACCGCCG-CCCGCCTGCTGTACCACCGCGACGACGACTTCACGGTG---GACTACAAG 59290 Query 32314 TTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTG 32373 || ||||| | | | || ||||| | | |||| || ||| |||||||| | || Sbjct 59291 GACGACGACGGCCTGAGCGTGGAGCCCTTCTACTACGTCCCTGTGATTCCGATGGTGCTG 59350 Query 32374 GTGAACGGTGCAGAAGGCATCGGAACGGGGTTC 32406 |||||||| | | |||||||| || |||||| Sbjct 59351 GTGAACGGGACGGCTGGCATCGGCACTGGGTTC 59383 Score = 107 bits (118), Expect = 2e-18 Identities = 260/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 31201 GGAATTCCGAAGCTCGACGACGCCAACTGGGC---CGGTACCCACAAGTCGCACGAGTGC 31257 || ||||||||||| |||||||| ||| ||| ||| | |||| |||||| ||| Sbjct 58133 GGCATTCCGAAGCTGGACGACGCGAACGAGGCGGGCGGAAAGCACAG--CGCACGC-TGC 58189 Query 31258 ACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCT-TGCTATTGCTGGCTTGAGTGT 31316 || || ||| | |||||||| ||||| || ||||| || ||| | ||||| || || Sbjct 58190 ACACTCATTCTAACCGAGGGCGACTCCGCGAAGGCCCTGTGC-ACGGCTGGGCTGGCGGT 58248 Query 31317 TGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGA 31376 || || || || || || || || || || |||||||||| || || || || Sbjct 58249 GAAGGACCGGGATTTCTTTGGCGTATTCCCCCTGCGTGGCAAGCCGCTCAATGTGCGCGA 58308 Query 31377 CGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGG 31436 ||| | |||| |||| | || || ||| || | ||| |||||| | || Sbjct 58309 CGCGAGCCTTAAGAAGGTGATGGCGTGCGAGGAGATTCAGTGCGTGATGAAGATCAT-GG 58367 Query 31437 GCTTCAGCATG-GCAAGGTATATAATTCACTGAGAGAAT-TGCGGTACGGTCGCCTCATG 31494 || || |||| || || || | || | | || || |||| ||||| | ||||||| Sbjct 58368 GCCTCGACATGCGCCAGTCGTACACGTCGCCG-GACAACCTGCGCTACGGGCACCTCATG 58426 Query 31495 ATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTCCTAAATATGTTC 31554 || ||| | ||| || | |||||||||||||||||| ||||| || | || | | Sbjct 58427 ATCATGTCTGACCAGGACCACGACGGCAGTCACATCAAAGGTCTCCTCATCAACTTCATA 58486 Query 31555 CACGTCTACTGGCCCAAGCTGAT 31577 ||| ||||||||| | ||||| Sbjct 58487 CACCACTACTGGCCGGATCTGAT 58509 >seq781 Length=13536 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||| ||||| ||| | |||||||| ||| | Sbjct 13090 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACGATTGCGCTTGAGGTCGAGGCGTCG 13149 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 13150 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 13209 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 13210 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 13269 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || |||| || |||||||| Sbjct 13270 ATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 13316 Score = 134 bits (148), Expect = 2e-26 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCA---AGACTATTACTCTTGAGGTTGAGTCA 27462 ||||| |||||||| |||||||| || | || |||| || | |||||||| ||| | Sbjct 12859 ATGCAGATCTTTGTAAAGACGCTCACAGACAGAAAGACGCTTGCGCTTGAGGTCGAGGCG 12918 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || ||||||| || || |||||||||||||| || || || ||| Sbjct 12919 TCGGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 12978 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || ||||| || ||||| || ||||| | || || || || ||||| Sbjct 12979 CAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTAC 13038 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || || || || || |||| || ||||| || Sbjct 13039 AACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGCGG 13088 >seq1779 Length=53708 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGAA-TCGTGGGTCGTCGTTTGGTCAGCGTCTCGC 64724 ||||| || |||||||| || ||||| || ||| | || || | |||| |||| Sbjct 28766 AAGGCGGAGTGGGCCATGCGCTGGATCAAGTCGACAACC-TCCTTCGCCGAGCGCCTCGT 28824 Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 || || ||| || || || || |||||||| || ||||| || || |||||||| Sbjct 28825 TGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGGCT 28884 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGA 64844 || ||||| ||||||||||| || || | || || |||||||||||||| || ||||| Sbjct 28885 GAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGACGA 28944 Query 64845 GGGGCTCCAC 64854 ||| |||||| Sbjct 28945 GGGCCTCCAC 28954 >seq386 Length=26907 Score = 111 bits (122), Expect = 2e-19 Identities = 218/325 (67%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||| | || ||||| | ||||||||| ||||| ||| |||| || ||| || |||||| Sbjct 12996 GAGATTTACAACCTGGCTGCCCAGTCGCACGTGAAGGTGTCCTTCGACATGCCTGAGTAC 13055 Query 24645 ACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNNN 24704 || || | ||||| | |||||||||| | || || || || || Sbjct 13056 ACCGCTCAGACAGATGCCGTCGGCACCCTAAAGCTGCTCGACGCGATCCG--AGCCAACG 13113 Query 24705 NNNNNNTTGAAA--TTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGC 24762 |||| | | || || || || || || ||| ||| |||||||| | Sbjct 13114 GTCTCATTGACACCTGCAAGTTCTACCAAGCCTCCACCTCGGAGCTGTACGGCAAGGTCC 13173 Query 24763 AGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAA 24822 |||||| || ||| ||||||| || || || || || || ||||| || | ||| | | Sbjct 13174 AGGAGATTCCTCAGACGGAGACGACCCCCTTCTACCCCCGTAGCCCCTACGCAGTCGCCA 13233 Query 24823 AGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCA 24882 || ||| ||| |||||||| || | ||||||||||||||| | || || | || || Sbjct 13234 AGCTGTACGCTTACTGGATTACTATCAACTACCGTGAGGCCTACGGTATCTTCGCTACCA 13293 Query 24883 ACGGAATTCTGTTCAACCATGAGTC 24907 |||| |||||||| || || || || Sbjct 13294 ACGGTATTCTGTTTAATCACGAATC 13318 >seq1639 Length=27095 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGC 27542 |||||| || || |||||||||||||| || || || ||||||||||| || || || || Sbjct 2811 GAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGC 2870 Query 27543 TGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 ||| ||||| || ||||| | || || || || ||||| || |||| ||||| ||||| Sbjct 2871 TGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCAC 2930 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || || || || | || || || || ||| || Sbjct 2931 GCTGCACCTTGTGCTCCGCCTCCGAGGAGGATAA 2964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| || || || ||||||||||| || || || || || ||||| Sbjct 4 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAG 63 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||| | || || || || ||||| || |||| ||||| ||||| || || || Sbjct 64 CTGGAGGAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTT 123 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | || || ||||| || Sbjct 124 GTGCTCCGCCTCCGCGGAGG 143 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||| ||| ||| ||||| || ||||||||||| || | || ||||| ||| | | Sbjct 1180 ATGCGAATTACTGTAAAGACCCTCACCGGCAAGACGATCGCACTGGAGGTCGAGGCCTCT 1239 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || |||||||||| | | || || || || ||| Sbjct 1240 GACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGTGCGCATCCCCCCGGAGCAG 1299 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| | || || ||||| | || || || || ||||| || Sbjct 1300 CAGCGCCTGATGTTCGCTGGCATGCTGCTAGAGGAGGGCCGCACGCTGGCTGACTACAAC 1359 Query 27586 GTCCAAAAGGAATCCACTCT 27605 | | || || ||||| || Sbjct 1360 ATTGACAATGAGTCCACGCT 1379 >seq1631 Length=42244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27486 GGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGG 27545 ||| || || |||||||||||||| || || || ||||||||||| || || ||||| || Sbjct 38179 GGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTTGCGGG 38238 Query 27546 TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCT 27605 ||||| || ||||| | || || || || ||||| || |||| ||||| || || | Sbjct 38239 CAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAACATCCAGAAGGAGTCGACGTT 38298 Query 27606 TCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || | || || || || ||| Sbjct 38299 GCACCTCGTGCTCCGCCTGCGGGGAGGA 38326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294317246720