Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq781 102 7e-17 >seq781 Length=13536 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||| ||| | ||| | ||||| || || | Sbjct 13086 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACGATTGCGCTTGAGGTCGAGGC 13145 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| ||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 13146 GTCGGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 13205 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||| || || |||| || | || || | || || Sbjct 13206 CCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTA 13265 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||||||||| | || | || |||| |||| ||||| Sbjct 13266 CAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 13316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCA---AGTCTATTACTCTTGAAGTGG 27039 |||| |||||||| |||||||| || || || | || || | || | ||||| || | Sbjct 12854 ACGCGATGCAGATCTTTGTAAAGACGCTCACAGACAGAAAGACGCTTGCGCTTGAGGTCG 12913 Query 27040 AACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCAC 27099 | |||| ||| |||| |||| || || || || || ||||| || ||||| || | Sbjct 12914 AGGCGTCGGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGC 12973 Query 27100 CCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG 27159 | || || ||||| | || | ||||| || || |||| || | || || | | Sbjct 12974 CGGACCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGG 13033 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||| || ||||||||||| | || | || |||| |||| || ||||| Sbjct 13034 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGCGGCAT 13091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906135301120