Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq781 156 1e-32 seq1639 123 6e-23 seq1631 109 1e-18 >seq781 Length=13536 Score = 156 bits (172), Expect = 1e-32 Identities = 164/215 (76%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||||||| || | || || Sbjct 13073 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 13014 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 13013 TCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 12954 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| || || ||||| || | | |||| Sbjct 12953 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAAGCGTC 12894 Query 211083 TTTC---CCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| | ||||| ||||||||||| | |||||| Sbjct 12893 TTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||||||| || | || || Sbjct 13301 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 13242 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 13241 TCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 13182 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| || || ||||| || | |||||| Sbjct 13181 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATCGTC 13122 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 13121 TTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 >seq1639 Length=27095 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||| ||||| || |||||||| || | ||||| || || || || || | || || Sbjct 1391 AGGATAAGGTACAGCGTGGACTCATTGTCAATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 1332 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||| || |||| ||||| || ||||| || || || || || | | |||||||| Sbjct 1331 TCTAGCAGCATGCCAGCGAACATCAGGCGCTGCTGCTCCGGGGGGATGCGCACCTTGTCC 1272 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||||||| || ||||| || | ||||||| Sbjct 1271 TGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGCCTCGACCTCCAGTGCGATCGTC 1212 Query 211083 TTTCCCGTGAGAGTCTTTACA 211103 || || ||||| ||||||||| Sbjct 1211 TTGCCGGTGAGGGTCTTTACA 1191 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || || || || | || || Sbjct 2945 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 2886 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 2885 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 2826 Query 211023 TGGATCTT 211030 |||||||| Sbjct 2825 TGGATCTT 2818 Score = 116 bits (128), Expect = 9e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || || || || | || || Sbjct 128 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 69 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 68 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 9 Query 211023 TGGATCT 211029 ||||||| Sbjct 8 TGGATCT 2 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || ||| || |||| |||||||| ||||| || ||||| || || | || ||| Sbjct 1556 CCCTCCTCTAGCAGCATGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 1497 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||| || || || ||||| ||||||||| || ||||| || Sbjct 1496 TTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGCCTCGACCTCCAG 1441 >seq1631 Length=42244 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | || ||||| || |||||||| || |||||||| || | || || Sbjct 38310 AGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 38251 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 38250 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 38191 Query 211023 TGGATCTT 211030 |||||||| Sbjct 38190 TGGATCTT 38183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159118494711440