Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq781 197 3e-45 seq1631 123 5e-23 seq1639 116 8e-21 seq1779 113 9e-20 seq386 102 2e-16 seq493 91.5 3e-13 >seq781 Length=13536 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| ||| Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13257 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || |||||||||||||||| || || ||||| ||| Sbjct 13256 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 13197 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| || ||||| Sbjct 13196 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 13137 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | |||||||| || |||| ||||| ||||| |||||||| Sbjct 13136 TCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 Score = 170 bits (188), Expect = 4e-37 Identities = 176/230 (77%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || | ||| || || |||||||||||||| ||| Sbjct 13088 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13029 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || |||||||||||||||| || || ||||| ||| Sbjct 13028 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 12969 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| || ||||| Sbjct 12968 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 12909 Query 283053 TCGAGAGTGATCGTCTTAC---CCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | | |||||| | | || | ||||| || || |||||||| Sbjct 12908 TCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 >seq1631 Length=42244 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || ||||| || || |||||||||||||| ||| Sbjct 38325 CCTCCCCGCAGGCGGAGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCA 38266 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| || || ||||| ||| Sbjct 38265 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 38206 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGC 283018 || ||||||||||| |||||||| || Sbjct 38205 ATGCCCTCCTTGTCCTGGATCTTCGC 38180 >seq1639 Length=27095 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| || || ||||| || || || || | |||| || || |||||||||||||||| Sbjct 145 AACCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 86 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | ||||||||||| ||||| || || || ||||| ||||||| || || ||||| | Sbjct 85 CCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGG 26 Query 282991 GAATACCCTCCTTGTCTTGGATCT 283014 | || ||||||||||| ||||||| Sbjct 25 GGATGCCCTCCTTGTCCTGGATCT 2 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || || || || | |||| || || ||||||||||||||||| Sbjct 2960 CCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2901 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| || Sbjct 2900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 2841 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||||||||| |||||||| || || Sbjct 2840 ATGCCCTCCTTGTCCTGGATCTTGGCCTT 2812 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 |||||||||||||| ||||||||||| |||||||| | | || || || |||| || Sbjct 1361 ATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCTAGCAGCATGCCAGCGAACATCAGGCGC 1302 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || || || || || | | ||||||| |||||||| || || || | ||||| ||| Sbjct 1301 TGCTGCTCCGGGGGGATGCGCACCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTG 1242 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || ||||| || || | ||||||||| || || | ||||| || Sbjct 1241 TCAGAGGCCTCGACCTCCAGTGCGATCGTCTTGCCGGTGAGGGTCTTTAC 1192 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 282934 GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAA 282993 || ||||||| |||||||| | | ||||| ||||||| || || ||||| || | Sbjct 1564 GCATGCGGCCCTCCTCTAGCAGCATGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGA 1505 Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 | ||||||||||| |||||||| || || || | ||||| ||||| || || ||||| | Sbjct 1504 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGCCTCGACCT 1445 Query 283054 CGAG 283057 | || Sbjct 1444 CCAG 1441 >seq1779 Length=53708 Score = 113 bits (124), Expect = 9e-20 Identities = 157/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||||| |||||||| | || ||||| ||||| ||||| | ||||| Sbjct 29048 GAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGCGTCTGATCGGAATGAACTCCGATCTG 29107 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 |||| || || ||||| ||||| || || ||| | | | |||| || |||||| Sbjct 29108 ATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCTGATCACGCTTGGCCACGAGACG 29167 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 | | | ||||||||||||||| || |||||| | || || || || || || || Sbjct 29168 ATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAGGCAAGACG 29227 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||||||||| ||| ||| |||| || || |||||| Sbjct 29228 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCC 29266 >seq386 Length=26907 Score = 102 bits (112), Expect = 2e-16 Identities = 135/185 (73%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042 |||||| || || |||||| ||||||| ||||| |||||||||||||| || || | ||| Sbjct 13139 CCAAGCCTCCACCTCGGAGCTGTACGGCAAGGTCCAGGAGATTCCTCAGACGGAGACGAC 13198 Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAA 44102 || || || ||||| || || || | || || ||||| || || || |||||| || Sbjct 13199 CCCCTTCTACCCCCGTAGCCCCTACGCAGTCGCCAAGCTGTACGCTTACTGGATTACTAT 13258 Query 44103 AAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATT-TGTTTCAATCACGAAA 44161 || || || ||| | || || || |||| | || ||| ||||| ||||||||| Sbjct 13259 CAACTACCGTGAGGCCTACGGTATCTTCGCTACCAACGGTATTCTGTTT-AATCACGAAT 13317 Query 44162 GTCCC 44166 |||| Sbjct 13318 CTCCC 13322 >seq493 Length=95943 Score = 91.5 bits (100), Expect = 3e-13 Identities = 224/338 (66%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | | | ||| |||||||| || || ||||||| | ||| ||||| Sbjct 59227 CGTGAAGATGTAACGGCCCGCCGCGTGGTCCTTACCGCCCTGCAGCCGGGTACCGAACTG 59168 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 || || || | || | | |||||| || || | ||||| || | ||| Sbjct 59167 GCCATCCTGCTGCAGGATGGGGAGGTTGTTCGAGCCCACAAAGTCCTGCGCAAGGGCCAC 59108 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| ||| || || || ||||||||||||| || || ||| |||| || ||||| Sbjct 59107 GATCGTCGCCACCAGCGACGCCTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACGTAACC 59048 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACAC 274018 | | ||| |||||||| | || || ||| |||||||| || | | ||| Sbjct 59047 AGCCAGCTGCGCAACCTTGATGGACTTCACCAGGTTCCGCTTGAAGCACGAGAAGAGCAC 58988 Query 274019 CTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATCATA 274078 ||| |||||| ||||||| || || || || || || || || | || | Sbjct 58987 CTTGCGCTGCCCAGGCTTGAGGCCGTCCACAACGCTCGGGATGGACCGCTCGCAGTC--A 58930 Query 274079 CCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 ||| ||||||| ||| || |||||||| |||||||| Sbjct 58929 GCGACGGAGAACAGAATGAGCTCCTTGTCTATGAAGTC 58892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046708944003424