Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq781 132 1e-25 seq1639 98.7 2e-15 seq1826 91.5 4e-13 seq1631 86.0 2e-11 >seq781 Length=13536 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| | || ||||| || || ||| Sbjct 13093 CAGATCTTCGTGAAGACGCTGACCGGGAAGACGATTGCGCTTGAGGTCGAGGCGTCGGAC 13152 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 13153 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 13212 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || ||||| || || ||| || Sbjct 13213 CGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAACATC 13272 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 13273 CAGAAGGAGTCGACGCTGCACCTCGT 13298 Score = 123 bits (136), Expect = 6e-23 Identities = 153/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAG---GAAAAACGATCACCCTCGAGGTGGAAAGCTCA 177980 || || || || || || ||||||| |||| ||| | | || ||||| || || Sbjct 12862 CAGATCTTTGTAAAGACGCTCACAGACAGAAAGACGCTTGCGCTTGAGGTCGAGGCGTCG 12921 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 12922 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 12981 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| ||||| || ||||| || || || | || ||||| || || ||| Sbjct 12982 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 13041 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 13042 ATCCAGAAGGAGTCGACGCTGCACCTCGT 13070 >seq1639 Length=27095 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| |||||||| || || ||||| ||||||||||| || || ||||||||||| || | Sbjct 2 AGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGC 61 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| || || || | || || || || || ||| |||| || || || || ||||| | Sbjct 62 AGCTGGAGGAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACC 121 Query 178126 TTGT 178129 |||| Sbjct 122 TTGT 125 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || || |||||||| || || Sbjct 2818 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAG 2877 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || || || || || ||| |||| || || || || ||||| Sbjct 2878 CAGCTGGAGGAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCAC 2937 Query 178125 CTTGT 178129 ||||| Sbjct 2938 CTTGT 2942 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 177963 CTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAA 178022 || ||||| || ||| ||||| |||||||| ||||| ||||| |||||||| || Sbjct 1441 CTGGAGGTCGAGGCCTCTGACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAG 1500 Query 178023 GGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || ||||| ||||||||||| || || ||||||||||| | | ||| || || || Sbjct 1501 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCATGCTGCTAGAGGAGGG 1556 >seq1826 Length=40188 Score = 91.5 bits (100), Expect = 4e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||| ||||||||||||| ||| ||| Sbjct 31561 CAAATTTTCGTCAAGACCCTCACGGGCAAGACCATCGCCCTCGAGGTGGAGGCCTCCGAC 31620 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAA 178018 ||||||||||| ||||| ||||| |||||||| Sbjct 31621 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAA 31655 >seq1631 Length=42244 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || || ||||| || || || Sbjct 38183 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAG 38242 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || ||||| || || ||| |||| || || || || |||| Sbjct 38243 CAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAACATCCAGAAGGAGTCGACGTTGCAC 38302 Query 178125 CTTGT 178129 || || Sbjct 38303 CTCGT 38307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203696406149664