Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq781 145 7e-30 seq1639 127 2e-24 seq1631 100 3e-16 >seq781 Length=13536 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13257 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| ||||| || ||||||||||| ||||||| || Sbjct 13256 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 13197 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | ||||| || ||| ||| Sbjct 13196 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 13137 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 13136 TCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 13089 Score = 131 bits (144), Expect = 2e-25 Identities = 168/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 13089 GCCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 13030 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||| ||||| || ||||||||||| ||||||| || Sbjct 13029 AAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 12970 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | ||||| || ||| || Sbjct 12969 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGAC 12910 Query 41815 CTCCACCGTTATCGTTTTAC---CCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || | ||| || | | || ||||||||||| || |||||||| Sbjct 12909 CTCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 >seq1639 Length=27095 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || ||||||||| ||||||||| ||||| ||||| | Sbjct 143 CCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 84 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 83 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 24 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 23 ATGCCCTCCTTGTCC 9 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || ||||||||| ||||||||| ||||| ||||| | Sbjct 2960 CCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2901 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 2900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 2841 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 2840 ATGCCCTCCTTGTCCTGGATCTT 2818 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 41662 CAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTT 41721 ||||||| ||| || | |||||| ||||| | || ||||| | || || ||| || | Sbjct 1380 CAGCGTGGACTCATTGTCAATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCTAGCAGCAT 1321 Query 41722 GCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG 41781 ||| ||||| ||||||||||| || |||| ||| | || | |||||||| ||| || Sbjct 1320 GCCAGCGAACATCAGGCGCTGCTGCTCCGGGGGGATGCGCACCTTGTCCTGGATCTTGGC 1261 Query 41782 CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 ||| | | | ||||| | ||| ||||||| | ||||| || || || || Sbjct 1260 CTTGACATTCTCGATCGTGTCAGAGGCCTCGACCTCCAGTGCGATCGTCTTGCCGGTGAG 1201 Query 41842 CGTCTTTACGAAAATCTGCATGTT 41865 |||||||| ||| ||||||| Sbjct 1200 GGTCTTTACAGTAATTCGCATGTT 1177 >seq1631 Length=42244 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || |||| ||| ||||||||| ||||| ||||| | Sbjct 38325 CCTCCCCGCAGGCGGAGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCA 38266 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || ||||||||||| ||||||| || Sbjct 38265 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 38206 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 38205 ATGCCCTCCTTGTCCTGGATCTT 38183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462290963027200