Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq87 248 1e-60 >seq87 Length=48621 Score = 248 bits (274), Expect = 1e-60 Identities = 470/683 (69%), Gaps = 23/683 (3%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| |||||| | ||||||||| ||| |||||||||||| || || ||| ||| Sbjct 37913 CAGCTGCTGCTTCAACGCCTCCACGTGATTGCTGTAGACGTGCGCATCACCGAGGGTGTG 37854 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 | | || || || || ||||| | |||| || | ||||||||| ||||| Sbjct 37853 CACCAGCTCACCTGGACGCAGCCCCGTCGCCTTTGCGATCAGGATGGTCAGCAGCGAGTA 37794 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 || |||||||| |||||||| || |||||||| | || |||||||||||| ||| Sbjct 37793 CGACGCGATGTTGAACGGCACCCCGAGACCCATGTCACAGGACCGCTGGTACAGCATGCA 37734 Query 145851 GGAGAGCTCC-CCGCCCGC-----CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAG 145904 ||| |||||| || | || ||||||||||||| || |||||||||||||| || Sbjct 37733 GGACAGCTCCTTCGTCTGCGTGTTGACGTAGAACTGGCCGAGCAGGTGGCAGGGCGGGAG 37674 Query 145905 GGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGG 145963 ||||| | |||| | ||||||||| || |||| || |||| | | || | | Sbjct 37673 TGCCATCTGGTGCAGCGCGCACGGGTTCCACGCCGTGAAGAGCAGCCGGC-GATCGTTCG 37615 Query 145964 GGTTCCTCTTGA---TCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGT 146020 ||||| |||||| |||| | ||| | | ||| ||||||||| || | || || Sbjct 37614 GGTTCGTCTTGAGGGTCTCGACAATC---TGCTTGATCTGGTCCACCCCTTCTCCGTCGT 37558 Query 146021 AATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGG 146080 | | | | | || || ||| | ||||||||||| | ||||||||| |||||||||| Sbjct 37557 AGTTCGCGTCGAAGCCCTTATACTCTGCCCCGAAGTGACGCCACTGGAAGCCGTAGACGG 37498 Query 146081 GCCCCAGGTCCCCGGGCTCCCTGT--GCC-CCAGCCCGGCCCGGGCGAGGAAGTCCCGGG 146137 | || |||||| ||| ||| ||| |||||| | | | ||||| ||||| | Sbjct 37497 GGCCGAGGTCC---ATCTCTTTGTTCGCCGTCAGCCCACGGCTGTCCAGGAACTCCCGTG 37441 Query 146138 ACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACC 146197 | |||||| |||||||||| | || | || | | | ||| | | || ||| | Sbjct 37440 AGCCGTTGCCGTCCCAGATGTGGATGTCCTTGTCCGCCAGCAACTGCGCGTTCGTCTCGC 37381 Query 146198 CCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCA 146257 | | | |||||| | ||||| ||| || || | ||||||||| | ||| || |||| Sbjct 37380 CACGTAGGAACCAAATAAGCTCCTCGCACACGCCGCGCCAGAAGACACGCTTCGTCGTCA 37321 Query 146258 GCAGGGGGAACTG---GCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGG 146314 |||| || | ||| | | ||||| ||| | ||| | ||||||| ||| | || Sbjct 37320 GCAGCGGCAGCTGGTTGTCTCGCAGCGAGAAACGCATCTGCGCACCGAAGAGGGAGATGG 37261 Query 146315 TGCCCACGCCCGTCCTGTCCCCC 146337 |||| ||||| || | |||| || Sbjct 37260 TGCCGACGCCGGTGCGGTCCTCC 37238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590038452383960