Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1483 107 2e-18 seq424 107 2e-18 seq2938 100 2e-16 >seq1483 Length=4907 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| |||||||| Sbjct 4329 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 4270 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||||||| || Sbjct 4269 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 4210 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | | ||| Sbjct 4209 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 4150 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | | || ||||||||||| | ||| || || || || ||||| Sbjct 4149 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 4103 >seq424 Length=20549 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| |||||||| Sbjct 20257 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 20316 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||||||| || Sbjct 20317 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 20376 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | | ||| Sbjct 20377 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 20436 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | | || ||||||||||| | ||| || || || || ||||| Sbjct 20437 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 20483 >seq2938 Length=1608 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | |||| || |||||||| || ||||| |||||||| Sbjct 1393 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1452 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| ||| | || || | |||||||||| || Sbjct 1453 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1512 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | || ||| Sbjct 1513 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 1572 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | | || ||||||||||| | ||| || || Sbjct 1573 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422232444469484