Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2277 428 5e-115 seq1483 149 6e-31 seq424 149 6e-31 seq2938 145 8e-30 seq702 95.1 1e-14 >seq2277 Length=2457 Score = 428 bits (474), Expect = 5e-115 Identities = 621/863 (72%), Gaps = 18/863 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| |||||||||||| ||| | |||| | ||||| || |||| ||| Sbjct 1434 GAGCCGCTGCAGCGCGAGAACCCGTTCCGCTACGTGCTGTTCCCGATCGTGTACCACGAC 1375 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | |||||| Sbjct 1374 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTG 1315 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| | ||||||||| | |||||||| ||||| || |||||||||||| Sbjct 1314 GGCAACGACATGCGCGACTGGGTGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGCAC 1255 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 |||||||| || ||||||| ||||||||| ||||| | |||||| || | ||||| ||| Sbjct 1254 GTGCTGGCGTTCTTCGCCGGCAGCGACGGGATCGTGATCGAGAACCTTGCGGAGCGGTTC 1195 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 || ||| ||||| | |||||||| |||||||| || ||| | |||||| Sbjct 1194 ATGGGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAG 1135 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGA 116934 ||| | |||||||| | ||| ||| || | ||||||||| | || | | ||||| Sbjct 1134 AACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAGGA 1076 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||||| || || || |||| ||| ||||||| |||||| || | ||||||| ||||| Sbjct 1075 GAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAGTG 1016 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||| |||| ||||| ||| || | || |||| ||||| ||| | | ||||| Sbjct 1015 GGCGGTGCGGTGGAT---CGGGAGCGGCGCGAGCTTCCAGGAGCGGCTGATCGGGTTCGC 959 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || |||||| ||||||| || || ||| ||| | || ||||| ||||| || Sbjct 958 CGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCG 899 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 ||| || ||||| || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct 898 CGGGCTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCA 839 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCGC 117230 ||||| || || |||||| ||| ||| | ||| | | | |||| | || Sbjct 838 CACGGACTTCGCGTGCCTGCTGTACAACGCGCACATCAAGCA-CAAGCTGCCGCGCGAGC 780 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCG 117289 |||| ||||||| || |||||||| |||||||| ||| ||| || ||| ||| Sbjct 779 GCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGCG 721 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348 ||||||||||| ||| | || | || ||| | | ||||||||| |||||||||||||| Sbjct 720 CTGCCGGTGCGGCTGATCGGCATGAA-CGCGGAGCTGATGTCGCAGTACATCGAGTTCGT 662 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGC--GCCAAGCACTACAACACGCCCAACCCG 117406 || ||| ||||||| | ||||| ||| | ||||||||| || | | | ||| Sbjct 661 GGCGGACCGGCTGCTTGTGTCGCTGG--GGCTGGAGAAGCACTACCACGTGACGCAGCCG 604 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 603 TTCGACTTCATGGAGATGATCTC 581 >seq1483 Length=4907 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | |||| ||||| || | | Sbjct 4103 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 4162 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 4163 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4221 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 4222 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAA 4281 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | ||| || | || ||| Sbjct 4282 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 4330 >seq424 Length=20549 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | |||| ||||| || | | Sbjct 20483 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 20424 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 20423 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 20365 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 20364 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAA 20305 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | ||| || | || ||| Sbjct 20304 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 20256 >seq2938 Length=1608 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40701 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA 40760 ||| || ||||| || ||||| || ||| | |||| ||||| |||| ||||| | | Sbjct 1608 CGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGCGACACGATCGA 1549 Query 40761 -AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 |||| | |||| || || | ||||| ||||||||||| |||||||||| || || | Sbjct 1548 GAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGA 1490 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| |||||||| || | ||||| ||| ||||||||||||||||||| Sbjct 1489 TCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGG 1430 Query 40880 AGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || | |||||||| || ||| ||||| || | || || Sbjct 1429 AGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1393 >seq702 Length=13543 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| || ||| | |||| || || |||| | Sbjct 153 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTTGAGGCCAGC 94 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 93 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 35 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTG 40839 ||| || || |||| || ||||| |||||| Sbjct 34 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515185717192240