Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2277 127 4e-24 >seq2277 Length=2457 Score = 127 bits (140), Expect = 4e-24 Identities = 357/532 (67%), Gaps = 26/532 (5%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 535 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 594 Query 157318 CCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAG 157375 | ||||| || | ||| || || ||| ||| || ||||||| | || ||| Sbjct 595 GAAGTCGAACGGCT--GCGTCACGTGGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAG 651 Query 157376 TAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGC 157434 | |||||||| |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 652 CCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCG 711 Query 157435 GACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTT 157493 || || ||||| | || | ||||| |||| ||| | | | || |||| | || || | Sbjct 712 CACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCT 770 Query 157494 CATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GA 157548 | | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| || Sbjct 771 CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGCGTTGTACAGCAGGCACGCGA 830 Query 157549 AG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCT 157607 || ||||| || || || ||||| | | ||| || ||| ||||| || ||| Sbjct 831 AGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCCG 887 Query 157608 TGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGC 157667 | | | ||||||||||||||| | | |||||||||||||| ||| | || Sbjct 888 GCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAGATGC 947 Query 157668 CCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGTTTCGGGGTTC---A 157724 |||||| || ||| |||| |||| |||| ||||| | || | || | Sbjct 948 CCTCCACCGCGGCGAACCCGATCAGCCGCTCC----TGGAAGC--TCGCGCCGCTCCCGA 1001 Query 157725 TCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 ||||| | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 1002 TCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073694874071232