Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq523 336 2e-87 seq2277 242 3e-59 seq702 100 3e-16 seq1483 98.7 9e-16 seq424 98.7 9e-16 >seq523 Length=17530 Score = 336 bits (372), Expect = 2e-87 Identities = 555/793 (70%), Gaps = 6/793 (1%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 |||||| ||||| || ||||| ||||| ||| || ||||||||||| || ||||| Sbjct 1358 GGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATTTC 1417 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || || || || ||||| |||||||| | || ||||||| || | ||||| Sbjct 1418 CGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCA 1477 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || |||||||| || ||| |||| ||| ||||||| ||||||||||| ||| || Sbjct 1478 CGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAA 1537 Query 23200 CCACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTCCTCGTACTTTTGGT 23258 ||||| ||| || || | |||| ||||| | ||| ||| |||||||||| | || Sbjct 1538 CCACACCTCCTGCGCCTGGAT-CGTCTGCACGCCGCGGCCCTCTGCCTCGTACTTCTCGT 1596 Query 23259 ACAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACA 23316 ||| ||| || || || | ||||| ||||| ||| || |||| || |||| Sbjct 1597 ACAG-GCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGC-TCGGGTC 1654 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||| || ||||| | || | | || || |||| || || ||||| ||||| || Sbjct 1655 CATCAGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCCACAG 1714 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||| || || || |||||| || || ||||||||||| |||| || Sbjct 1715 CGCGTAGAAGAGGTCACGCGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAG 1774 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 |||| | || | ||| |||||||||||||| ||||| | ||| || || ||| | ||| Sbjct 1775 AAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTT 1834 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 | ||||||||| || ||||||||||| ||||||||| |||| | ||||||||||| | Sbjct 1835 ACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAA 1894 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||||||||| ||| ||| || | || | || | |||||| || Sbjct 1895 GCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGGAC 1954 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | || ||||| || ||| || || | ||||| | ||||| |||||||| Sbjct 1955 GTGCAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTA 2014 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 |||||| ||||||||||| || || | ||||| | ||| ||||| ||| |||| || Sbjct 2015 GATGCCGTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAGCTCATCTGCGGCTT 2074 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 ||||| |||| ||| || |||||| ||||||| || ||| | || |||||| || Sbjct 2075 CGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGACATCAG 2134 Query 23797 ATTGTACGTGTCG 23809 | |||||| ||| Sbjct 2135 CTCGTACGTCTCG 2147 >seq2277 Length=2457 Score = 242 bits (268), Expect = 3e-59 Identities = 515/760 (68%), Gaps = 14/760 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || |||||| ||||||| ||||||| ||| || || || | |||||| | Sbjct 1266 TTCATCAAGCACGTGCTGGCGTTCTTCGCCGGCAGCGACGGGATCGTGATCGAGAACCTT 1207 Query 57738 GTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAA 57797 | || | || || ||| | ||| |||||||| | || ||||| || || Sbjct 1206 GCGGAGCGGTTCATGGGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAG 1147 Query 57798 GTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAG 57857 || || || ||| | || || || | ||| ||| | || | || |||||| | | | Sbjct 1146 CTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACG 1087 Query 57858 GACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAA 57916 |||| ||| ||||| | | ||| | |||||||| | || || |||| | ||| || Sbjct 1086 GACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGAT-CCCGTGCATCCAGAA 1028 Query 57917 GAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976 |||||| |||||| | | ||||| |||| | || | ||| ||| |||| Sbjct 1027 GAAGGCGGAGTGGGCGGTGCGGTGGATCGGGAGCGGCGCGAGC---TTCCAGGAGCGGCT 971 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTT 58035 |||| ||||||||| || || || || ||||| || ||| | | |||| | | || | Sbjct 970 GATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCG-CGCTGTTCT 912 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || ||||||| ||||| |||||||| || |||||||| ||||||||| |||| ||||||| Sbjct 911 GGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCG 852 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAAC 58152 ||||||| || || || || || |||||||| ||| || | ||||| | || | Sbjct 851 ACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGCGCACATCAAGCACAAGC 792 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | |||| || ||| | |||| || ||| || ||||| ||||| ||||| Sbjct 791 TGCCGCGCGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCA 732 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 || ||| || || |||||| || |||| |||||| || ||||||| |||||| Sbjct 731 TCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACA 672 Query 58273 TTGAGTTTGTTGCCGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACAC 58330 | ||||| || || ||| | || || ||| | |||||| || ||| || Sbjct 671 TCGAGTTCGTGGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGA--AGCACTACCACGT 614 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390 || | ||||| || || ||| | |||||||||| |||||||||| ||||| ||||| Sbjct 613 GACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGA 554 Query 58391 aaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || || |||| || || || || ||||||||| Sbjct 553 GAAGAAGGTCGGCGAGTACCAGAAGGCGGGTGTGATGAGC 514 >seq702 Length=13543 Score = 100 bits (110), Expect = 3e-16 Identities = 119/161 (74%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 31185 AATCAA---ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACG 31241 |||||| |||||||||| ||||| ||||| ||||| ||||| |||||| | |||| | Sbjct 164 AATCAATAGACATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGG 105 Query 31242 TTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGC 31301 |||| | ||||| |||| | || || || || ||||||||| ||| | | Sbjct 104 TTGAGGCCAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCC 45 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTG 31342 |||| ||||||||||| || || || |||||||| ||| || Sbjct 44 CGCCGGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTG 4 >seq1483 Length=4907 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || || Sbjct 4102 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAG 4161 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 4162 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4221 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTA 31368 |||||| || || ||||| ||||| ||| |||| || | | | || || | || || Sbjct 4222 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACG-CT-TGCG-GACTA 4278 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 4279 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 4314 >seq424 Length=20549 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || || Sbjct 20484 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAG 20425 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 20424 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 20365 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTA 31368 |||||| || || ||||| ||||| ||| |||| || | | | || || | || || Sbjct 20364 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACG-CT-TGCG-GACTA 20308 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 20307 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 20272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737430756080