Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2277 154 2e-32 seq523 129 9e-25 >seq2277 Length=2457 Score = 154 bits (170), Expect = 2e-32 Identities = 578/895 (65%), Gaps = 50/895 (6%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 1398 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 1339 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || ||| |||| || | ||| Sbjct 1338 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGCGCGACTGGGTGAAGC---TGAAC 1282 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | |||| ||||| |||||| ||| || ||| Sbjct 1281 GACGGGGAGCGGCACTTCATCAAGCACGTGCTGGCGTTCTTCGCCGGCAGCGACGGGATC 1222 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 1221 GTGATCGAGAACCTTGCGGAGCGGTTCATGGGCGACGTGAAGGTGCCGGAGGCG-CGCGC 1163 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| | ||||| |||||| | |||||||| | |||||| ||| | Sbjct 1162 GTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCT 1103 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 1102 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 1044 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CT 125411 | |||| || | || ||||| | |||| | | |||||||||| || | | || Sbjct 1043 TCCCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGGGAGCGGCGCGAGCT 984 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAG 125470 || || | ||| | | |||||||| || |||||||||||||| || |||| | Sbjct 983 TCCAG----GAGCGGCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCG 928 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| || Sbjct 927 TTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAA 869 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT----TTC 125586 |||| | || || || ||||||||||| ||| ||||| || || |||| | Sbjct 868 CGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGC 809 Query 125587 GCA--------ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 ||| || | |||| | |||| || | | || || ||||| Sbjct 808 GCACATCAAGCACAAGCTGCCGCGCGAGCGC-------GTGCTG--GAGATCATC----- 763 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 || || || |||| || || | ||||| | ||| | || ||||| | | Sbjct 762 -GT---GGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCT 707 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||| ||||||||| |||| |||| ||||||| ||||| ||||| || || || || Sbjct 706 GATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCT 647 Query 125759 GTACGAGTTGATTGGCC---GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 | || | | || | ||| ||| ||| | | | || || || |||||| Sbjct 646 ---TGTGTCGCTGGGGCTGGAGAAGCACTACCACGTGACGCAGCCGTTCGACTTCATGGA 590 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || |||| ||||| ||||| ||||||||||||||| |||||||| Sbjct 589 GATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTAC 535 >seq523 Length=17530 Score = 129 bits (142), Expect = 9e-25 Identities = 364/547 (67%), Gaps = 14/547 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| | ||| ||| | ||||| ||||| | ||| ||| || || | || Sbjct 1915 ACGAACGGGACGTCCAACGGCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCC-CG 1857 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| ||| || || || | ||| ||||| |||| || || Sbjct 1856 TTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTG 1797 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGC 96982 ||| || ||| | || | |||| | | || ||||| | | ||| || || Sbjct 1796 GCATGCCGACATCTTCGGCTTTCTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCA 1740 Query 96983 ACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA 97042 || || | ||| | || || || || ||| | || || ||||||||||||| || || Sbjct 1739 GCGCGCGCGTGACCTCTTCTACGCGCTGTGGATCCCGGACCTGTTCATGAAGCGAGTGAA 1680 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGA-CTCGTCACCCGGTCTGTCCGATTGCT 97101 || || | |||| || ||| | ||||| | ||| || || ||| || |||| Sbjct 1679 GAGCGAGGGGAAGTGGACGCTGATG-GACCCGAGCGCGTGCCCGGGGCTGAGTGACTGCT 1621 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGA 97160 ||||| ||||| ||| | |||| | |||||| ||||||||| |||| ||| Sbjct 1620 ACGGCGAGGAGTTCGAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCGCGGCGTGCAGA 1561 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 ||| || | || | || ||||| |||||| | | | ||| | ||||| || Sbjct 1560 CGA-TCCAGGCGCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACCGGCGTC 1502 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCAC 97279 |||| |||||| |||||||| | ||| | | |||| ||||| || | ||||| Sbjct 1501 CCGTTCATTCTGTACAAGGACGC-GTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCAC 1443 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 |||||| |||| || |||||||||||||| || |||||| | || ||||| ||||| || Sbjct 1442 GATCAAGTGCTCGAACCTGTGCACGGAAATCGTCGAGTACACGTCGCCGGAGGAGACCGC 1383 Query 97340 AGTTTGC 97346 || ||| Sbjct 1382 CGTGTGC 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741011040415240