Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq133 100 2e-16 >seq133 Length=39883 Score = 100 bits (110), Expect = 2e-16 Identities = 133/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 44371 CAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTT-TGCGTCGTTCA 44429 |||||||| | | | ||| || | ||| | || ||||||||||| ||| | || Sbjct 4483 CAAGGTGAAGATCCGCACCATCAAGATCCCCAACATCGGCGACAAGTTCTGCAGCCGGCA 4542 Query 44430 CGGCGCAAAAGGGGACATGCGGAG--CCGTCCTGACCCAGGAGGACATGCCCTTCGACAA 44487 ||| ||| ||||| || ||| | || | | ||||||||||||||||||| || Sbjct 4543 CGG-GCAGAAGGGCACCAACGGCATTCAGTTCCG--CCAGGAGGACATGCCCTTCAACCG 4599 Query 44488 AAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 |||| || ||||| |||||||||||||||||||||||| |||||||| | ||||| || Sbjct 4600 CGACGGCGTCGTGCCGGACCTCATCATCAACCCCCACGCCATTCCCTCCCGCATGACGGT 4659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340116047925027