Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq523 187 6e-42 >seq523 Length=17530 Score = 187 bits (206), Expect = 6e-42 Identities = 520/778 (67%), Gaps = 26/778 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || | | ||| || || || | || || |||||| || Sbjct 2116 TTCACCCACGCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCG 2057 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | ||||| || |||||| || |||| ||||| || ||| | Sbjct 2056 TGCTTCCTTGTCGCTTCAAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAG 1997 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCG-T 363723 || || | || |||| || ||||| || || || | || ||||||| | || | Sbjct 1996 TGCGCCGTCATCAGCAAGGCGGCGGGCGGCATCGGCCTGCA-CG-TCCACAACATCCGCT 1939 Query 363724 GCACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782 | | | ||| ||||| |||||| | |||| || || || |||| || ||||| Sbjct 1938 CCGCCGG-CAGCTACATCGCCGGCACGAACGGGACG-TCCAACGGCTTGGTGCCGATGCT 1881 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 |||||||| |||| ||||| | ||||| |||||||| || || |||||||| || || Sbjct 1880 GCGTGTGTTCAACAACACTGCCCGTTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGTGC 1821 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 || || || || || ||||| |||||||| || || | ||||| ||| | ||| Sbjct 1820 CTTCGCCATCTACCTGGAGCCGTGGCATGCCGACATCTTCGGCTTTCT---GCTGCTGAA 1764 Query 363903 A---AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 ||||| || || || || ||| || ||||| || ||||| || || ||| | | Sbjct 1763 GCGCAACACCGGCAAGGACGACCAGCGCGCGCGTGACCTCTTCTACGCGCTGTGGATCCC 1704 Query 363960 TGACCATTTTATGAAGCGCGTGGAG-GC-AGGTAAGAATTGGTCACTCTTTTGCCCACAC 364017 |||| || |||||||| ||| || || ||| ||| ||| | || | ||| | Sbjct 1703 GGACCTGTTCATGAAGCGAGTGAAGAGCGAGGG--GAAGTGGACGCTGATGGACCCGAGC 1646 Query 364018 GAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT 364077 | || || || || || | || || || | | || ||||| ||||| Sbjct 1645 GCGTGCCCGGGGCTGAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTGTACGAGAAGTAC 1586 Query 364078 GAATCGGAGGGAAAGGCTCGTA-AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 || | ||||| | ||| |||| || | || ||| || | |||||||||||| | Sbjct 1585 GAGGCAGAGGGCCGCGG-CGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTTGCCATCCT 1527 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 || |||||||| ||||| || || | || ||||||| || |||||||| |||| Sbjct 1526 CGAGTCGCAGATCGAGACCGGCGTCCCGTTCATTCTGTACAAGGACGCGTGCAACAGCAA 1467 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTAT 364253 ||| |||||| || |||| || || | ||| || || ||||| || || || || | Sbjct 1466 GTCGAACCAGAAGAACCTCGGCACGA-TCA--AGTGCTCGAACCTGTGCACGGAAATCGT 1410 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 || ||||| | || || ||||| ||||| || ||||| || || ||||| || ||| Sbjct 1409 CGAGTACACGTCGCCGGAGGAGACCGCCGTGTGCAACCTCGCCTCCATCGCCCTGCCG 1352 Score = 105 bits (116), Expect = 2e-17 Identities = 284/429 (66%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||||||| | || || |||||||| || || || | ||||||||||| ||| Sbjct 919 CGCAACTCCCTCCTGCTCGCCCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAAC 860 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || ||||| || || || || Sbjct 859 AACGAGTGCTTCGAGCCATTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGTGGCGAG 800 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || ||||| || || |||||||| || | ||| || | | |||||||||||| || Sbjct 799 TTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGGCTGTGGAACGAG 740 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT-TCCAGGATTTCC 364970 | ||| ||| | |||||| || || || || || | || || ||| | | || Sbjct 739 ACGATGCGGAATGAGATCATCTCCTACAACGGCTCCGTCCTGACGATCGACAGCA-TCCC 681 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || || ||| | ||| ||||| ||||| || | ||| | || || || Sbjct 680 GGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATCCCGCAGCGCAAGCTGATCGA 621 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| ||| ||||| | ||| ||| ||||||| | ||| | ||| || | Sbjct 620 CATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCCCAGTCGCTGAACCTCTTCCTG-C 562 Query 365091 TCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 || || ||||| | || | || || |||| |||||| ||| | || ||||| | Sbjct 561 AGAGCCCCACCTCTGGTCAGATCACGTCGATGCTCTTCTACACCTGGGAGTCGGGTCTCA 502 Query 365150 AGACAGGTG 365158 |||| |||| Sbjct 501 AGACGGGTG 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303266780765618