Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq261 96.9 4e-15 seq133 91.5 2e-13 >seq261 Length=28860 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126180 GGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 |||| | ||||| ||| || || |||||||| |||| | |||||| || || || Sbjct 16095 GGTGAAGATGTAACGGCCCGCGGCGTGGTCCTTGCCGCCCTGTAGCCGCGTACCGAATTG 16154 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 |||||| || | | | | |||||| || |||||||||||||| | | ||| Sbjct 16155 GCCGTCCTTGCGCAGAAGCGGGAGGTTGTTGCTGCCGACAAAGTCCTGCGCCATCGCGAC 16214 Query 126300 AATGGTCTCGCA-CAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 || |||| ||| ||| |||||| ||||| | |||| ||| ||||| | |||||||| Sbjct 16215 GATCGTCT-GCACCAGCGACTGCTCCCCGTGGTGGTAGGCGGAGTGCTCCGACACGTAGC 16273 Query 126359 CGCTCAGCTGCGCAACCTTGAT 126380 || ||||||| | |||||||| Sbjct 16274 CGGACAGCTGCACCACCTTGAT 16295 >seq133 Length=39883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 15050 CCCGAGATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 ||| | || ||||||||||| ||| | || | || ||| |||||||| |||||| Sbjct 4511 CCCAACATCGGCGACAAGTTCTGCAGCCGGCACGG-GCAGAAGGGCACCAACGGCATTCA 4569 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTA-CCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 |||| |||||| ||||||||||| | ||||| | ||| | ||| ||| | ||||||| Sbjct 4570 GTTCCGCCAGGAGGACATGCCCTTCAACCGCGAC-GGCGTCGTGCCGGACCTCATCATCA 4628 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGAC 15195 ||||| || ||| || ||||||||||| Sbjct 4629 ACCCCCACGCCATTCCCTCCCGCATGAC 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611352267162400