Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2277 116 8e-21 seq261 86.0 1e-11 >seq2277 Length=2457 Score = 116 bits (128), Expect = 8e-21 Identities = 265/392 (68%), Gaps = 15/392 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 554 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 613 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | ||| ||||| | || || | || | | ||||| ||||| ||||| | Sbjct 614 ACGTGGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCCACGAACTCGATG 673 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || |||||| Sbjct 674 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATG 733 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 734 AACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 793 Query 251803 TTGTTCTCCA-----GCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTC 251855 |||| || | || || |||||| | || ||| || | || |||||| ||||| Sbjct 794 TTGTGCTTGATGTGCGCGTT--GTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTC 849 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTG 251913 |||||| ||| | ||||||| | || | ||| || ||||||| ||| || ||| | Sbjct 850 GTCGCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCCGGCATCAGCCCGCGCTTCTTC 907 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||||| | ||||| || || || ||||| Sbjct 908 AGCCAGAACAGCGCGCAGAACGACCCGGAGAA 939 >seq261 Length=28860 Score = 86.0 bits (94), Expect = 1e-11 Identities = 209/315 (66%), Gaps = 14/315 (4%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||| | ||||| ||||| || | || ||||| || Sbjct 16430 GACTTTGTGGACAAGGAGTTGATTCTCTTCTCCATCGCCGACTGC----GAGCGCAGCAT 16375 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||| | || ||| ||||||| ||||| ||||||||||| ||| || || Sbjct 16374 CCCGAGCGCCATCGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTCTTCGCCTGTTTTAA 16315 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| |||||||| | || ||||| | ||| | || || || || || || || Sbjct 16314 GCGCAACCTGGTCAACTCGATCAAGGTGGTGCAGCTGTCCGGCTACGTGTCGGAGCACTC 16255 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | |||||| ||||| |||||| ||| | | || || | ||||| ||||||| Sbjct 16254 CGCCTACCACCACGGGGAGCAGTCGCTGGTGCAGACGATCGTCGCGATGGCGCAGGACTT 16195 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCGTCT 218810 ||| ||||| |||||| | | ||| || | || |||| || || ||| | || || Sbjct 16194 TGTCGGCAGCAACAACCT---CCCGCTTCTGCGCAAGGACGGCCAATTCGGTACGCGGCT 16138 Query 218811 ATTGGGTGGAAAGGA 218825 | ||| || ||||| Sbjct 16137 ACAGGGCGGCAAGGA 16123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027768333542359