Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2277 167 4e-36 seq523 113 8e-20 seq4590 87.8 3e-12 seq1382 87.8 3e-12 seq1227 87.8 3e-12 seq1047 87.8 3e-12 seq915 87.8 3e-12 seq108 87.8 3e-12 seq51 87.8 3e-12 >seq2277 Length=2457 Score = 167 bits (184), Expect = 4e-36 Identities = 308/445 (69%), Gaps = 15/445 (3%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| || ||||||||||||||||| ||| |||||||||||| | |||||||| Sbjct 516 TCATCACACCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 575 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | || | ||||| | Sbjct 576 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTGGTAGTGCTTCTCCAGCC 635 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| |||||||||||||||||||| |||||| |||| || Sbjct 636 CCAGCGACACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGT 695 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||| |||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 696 TCATGCCGATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 754 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| |||||| ||| | |||| || | | |||||||| || || | || Sbjct 755 GCGTCC---ACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGCG 811 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | || | | ||| |||||||||||||| ||| | ||||||| Sbjct 812 TTGTACAGCAGGCACGCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 871 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| ||||| || || ||||||||| | |||||||||||| Sbjct 872 CTGAACGTCAGCCCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 931 Query 10347 CCGGAGAACAGAAGA--CCCTCCAC 10369 ||||||| |||||| |||||||| Sbjct 932 CCGGAGA--AGAAGATGCCCTCCAC 954 Score = 87.8 bits (96), Expect = 3e-12 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| ||||| || || |||||||| || ||||| | || | ||||||||||||| Sbjct 1208 AGGTTCTCGATCACGATCCCGTCGCTGCCGGCGAAGAACGCCAGCACGTGCTTGATGAAG 1267 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742 || ||||| | |||||||| ||||| |||||| || || | | || | || | Sbjct 1268 TGCCGCTCCCCGTCGTTCAG--CTTCAC-CCAGTCGCGCATGTCGTTGCCCAGGTCGATC 1324 Query 10743 TCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTAC 10802 ||||||| ||||||| | | || ||||||| | | | |||||| ||||| Sbjct 1325 TCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTAC 1384 Query 10803 CGGATGGGGAAC 10814 ||| |||||| Sbjct 1385 ACGATCGGGAAC 1396 >seq523 Length=17530 Score = 113 bits (124), Expect = 8e-20 Identities = 393/606 (65%), Gaps = 23/606 (4%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| || || || |||| || ||||| ||||| || || | || || || || | Sbjct 1377 CACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATTTCCGTGCACAGGTTCGAGCAC 1436 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| |||||| || ||| | ||| ||| ||||| |||||||| || | Sbjct 1437 TTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC-GTCCTTGTACAGAAT 1495 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | || | ||| ||||||||||||| || || ||| ||| || || |||| | Sbjct 1496 GAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAACCACACCTCCTGCGCCTG 1555 Query 31880 GACGACTTTCTTC-GCACGCC-----CCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 || || || ||||||| |||| | |||||| |||||| |||| | Sbjct 1556 GA------TCGTCTGCACGCCGCGGCCCTCTGCCTCGTACTTCTCGTACAGGCGCTCGAA 1609 Query 31934 CTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGC 31993 ||||| ||| || || | || || || ||| | | ||||| | |||| ||| Sbjct 1610 CTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCTCGGGTCCATCAGCGTCCACTT 1669 Query 31994 GACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATT 32053 | ||| || |||||||||||||||||||| | ||||| |||||| || || | Sbjct 1670 CCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCCACAGCGCGTAGAAGAGGTC 1729 Query 32054 CCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTC 32113 | ||||| ||| |||| || ||| || |||||||| ||| | | |||||| Sbjct 1730 ACGCGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGAAAGCCGAAGATGTC 1789 Query 32114 GGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTT 32170 || || ||||| ||||| | |||||| | |||||||| | || ||||||| Sbjct 1790 GGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGGTC 1849 Query 32171 TGCGTA---TGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTC 32227 |||| |||| ||| ||| | |||| |||||| || || | ||| | ||| Sbjct 1850 CACGTAACGGGCAG-TGT--TGTTGAACACACGCAGCATCGGCACCAAGCCGTTGGACGT 1906 Query 32228 GCCATTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGAT 32287 || || || || ||| | | || | ||| |||| | | |||||||||||| Sbjct 1907 CCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGGACGTGCAGGCCGAT 1966 Query 32288 GCCGCC 32293 |||||| Sbjct 1967 GCCGCC 1972 >seq4590 Length=691 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 386 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 443 >seq1382 Length=5656 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1843 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1900 >seq1227 Length=6849 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 304 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 247 >seq1047 Length=8467 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 310 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 367 >seq915 Length=9833 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 9724 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 9667 >seq108 Length=43966 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 4418 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 4361 >seq51 Length=57938 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 43320 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 43377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921562506064280