Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq523 428 8e-115 seq2277 324 3e-83 >seq523 Length=17530 Score = 428 bits (474), Expect = 8e-115 Identities = 1171/1758 (67%), Gaps = 73/1758 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| |||||| || || || || | || ||||| || | |||||| |||| || ||||| Sbjct 444 ACGGTGAACTTGATCGCGT-CGGCAGCCGCCTTCGTGCGCAGGTAATACACACCCGTCTT 502 Query 243796 GAGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 ||| || ||| ||||| || || | |||| | ||| | || || ||| | Sbjct 503 GAGACCCGACTC--CCAGGTGTAGAAGAGCATCGACGTGATCTGAC-CA----GAGGTGG 555 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || | || |||||||| || |||||| |||||||| | | | | || Sbjct 556 GGCTCTGC-------AGGAAGAGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGG 608 Query 243914 TCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGC 243973 || ||||||| ||| || | ||| | ||||| || | || ||||| | Sbjct 609 TCGCGGGCCATGTCGATCAGCTTGCGCTGCGGGATCTCCCACACGGTGCGGTAGAGCTCC 668 Query 243974 TTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGG 244033 ||||||| || |||| | ||||| || | || ||||| |||| | ||||| || Sbjct 669 TTGAGGTCGTCCGGGATGCTGTCGATCGTCAGGACGGAGCCGTTGTAGGAGATGATCTCA 728 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA---GCGCCTCGACCAGGTGCCTG 244090 | ||||| | ||||||||||| || ||||| | | || || |||| | || Sbjct 729 TTCCGCATCGTCTCGTTCCACAGCCC---GCGCTTGATGAGGTCCATCACGAGGTACTTG 785 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||||||| | ||||| || |||||| ||||| ||||| ||| | ||| ||| Sbjct 786 TTCACCACCGGGAACTCGCCACTCAGCACACGGCGGACGTAGATGTTCGAGGTGAATGGC 845 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| ||||||| || ||||||| ||| ||| || ||||| || | | | Sbjct 846 TCGAAGCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATCGGGGCGAGC 905 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCT---CTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 || || ||| | || |||| ||| | | | | || | ||| || ||||||| Sbjct 906 AGGAGGGAGTTGCGCAGGCCGA-CCTGAACCACCTTCTGCTTCAG-GCT-GTCCCAGTCC 962 Query 244268 CACATGCCCGAG--AGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 || || | ||| | || ||| ||||||||||||||||| | |||| Sbjct 963 CAGCGACCGCTGTTAGGACG-CGGGTTCTT----CCACATGTCAAACTGCAAGATGCCCT 1017 Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 ||| | || ||||||| | ||||| ||| || || || || |||| || || | Sbjct 1018 GGCTCGCCGGACTGCCCTTGAAGGTCTCGTAAGGGCCTTCCTCCTTCGCCAACTC-CATC 1076 Query 244386 T-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GC 244443 | | || | ||||| ||||||| |||||||||||| | |||| ||| | || Sbjct 1077 GACGCCTCCACCGCGGCAAAGTAGATCGTCTCGAAGATCTCCGCATTCACC-CGCTGCGC 1135 Query 244444 CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 || | | | | |||||| | | || | |||||| | || ||||| |||||||| || Sbjct 1136 CTCGGCACTGACGAAGGGCAGACGCAGTAGAATGAAGGCATCCGCCAGGCCCTGCACACC 1195 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGT 244562 || ||| | || | || ||| ||||| ||| | | | || ||| ||||| ||| Sbjct 1196 GAGGCCCACCGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGTCTC-CACCGGGTAGTAGT 1254 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGC 244621 ||| ||| || ||| ||| ||||||||||||||| ||| |||| | ||||||| Sbjct 1255 TGCGGTCAATGACCCGGTTCAGGTTGCGGGTGATC-TGCTTCGTGACGCTGTACAGCAGC 1313 Query 244622 TGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG-AGGGC 244680 || || | | | | | | | ||| || | ||| || || | ||||| Sbjct 1314 TG---GTGATCCACCTCGCGCTTCTCCTCGTT---------CACGAAG-CGCGGCAGGGC 1360 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | ||| |||||||| ||||| |||||||| ||||||| ||| || || || Sbjct 1361 GATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATTTCCGT 1420 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| ||||| ||||||||| ||||| |||| || || || |||||| |||||| || Sbjct 1421 GCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC 1480 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 ||||||||| || ||||| || | |||||||||| ||| | |||||| | ||| Sbjct 1481 GTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAACCA 1540 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACA 244919 | ||| |||| || |||| ||| ||| | |||||||||||||| ||||| Sbjct 1541 CACCTCCTGCGCCTGGATCGTC-TGCACGCCGCGGCCCTCTGCCTCGTACTTCTCGTACA 1599 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CGGGCACATG 244978 || ||||||||| ||| || || || || ||||||| ||| |||| ||| Sbjct 1600 GGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACG-CGCTCGGGTCCATC 1658 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 || |||||| || || ||| || | || |||||| ||||| |||||||| || || Sbjct 1659 AGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCCACAGCGCG 1718 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 | ||||||||| | | | ||| |||||| ||| ||||| | ||||| || |||| Sbjct 1719 TAGAAGAGGTCACGCGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGAAAG 1778 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 | |||| |||| | ||||| ||||||| ||||| |||| ||| || ||||| | Sbjct 1779 CCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTACCG 1838 Query 245159 CCTCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 || ||||||||||| | | || | |||||| | ||||| | ||||| | ||| Sbjct 1839 CCGCCCTGGTCCACGTAACGGGC-AGTGTTGTTGAACACACGCAGCATCGGCACCAAGCC 1897 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA 245277 ||| || ||||| ||||| ||||||| ||| | | || |||| || | Sbjct 1898 GTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGGACGTG 1957 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || ||| | ||||| || |||| ||||| |||||| ||| | ||||| || Sbjct 1958 CAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGAT 2017 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGC----AGAAAGCAGGAGGACAGCTGGGGCT 245393 ||| || ||||||| |||| | | ||| || ||||| ||| || ||| |||| Sbjct 2018 GCCGTCGATGCTGT----CTTCCTTTGAAGCGACAAGGAAGCACGAGCTCATCTGCGGCT 2073 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGA 245453 | || ||| | |||||| || || ||| |||||||||| ||| ||| || ||| | | Sbjct 2074 TCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGACATCA 2133 Query 245454 ACCCGTACGTCTGGAGCA 245471 | ||||||||| | ||| Sbjct 2134 GCTCGTACGTCTCGCGCA 2151 >seq2277 Length=2457 Score = 324 bits (358), Expect = 3e-83 Identities = 596/865 (69%), Gaps = 9/865 (1%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||||| | |||| ||||||||| || ||||||| || | || || || |||||| Sbjct 1390 GATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCT 1331 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||||| ||||||| ||| |||| | || ||||| | ||| || || Sbjct 1330 GGAGGAGATCGACCTGGGCAACGACATGCGCGACTGGGTGAAGCTGAACGACGGGGAGCG 1271 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | ||| |||| || | ||||| |||||||||| | ||||| || || | ||||| Sbjct 1270 GCACTTCATCAAGCACGTGCTGGCGTTCTTCGCCGGCAGCGACGGGATCGTGATCGAGAA 1211 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 ||| || |||||||| || ||| || ||||||||| |||||||| || Sbjct 1210 CCTTGCGGAGCGGTTCATGGGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTT 1151 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 1150 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACAT 1091 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| || ||| ||||| | | || || ||||||| || |||||| | Sbjct 1090 CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCA 1031 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||||||| |||||| | ||||||| ||| || ||| | ||| ||| | Sbjct 1030 GAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGGGAG---CGGCGCGAGCTTCCAGGAGCG 974 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| | | || |||| || ||||||||||||||||| || | ||| | | | || Sbjct 973 GCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCGCGCTGTT 914 Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||| ||| || | | |||||| || || || ||| ||||| || ||| | Sbjct 913 CTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCG 854 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCT-CGAGCCACCTCAGGCACA 42882 |||||||| ||||| | |||||| || ||||| |||| | || || || ||| ||||| Sbjct 853 CGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGCGC-ACATCAAGCACA 795 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| || ||||| || | || |||||| ||| || ||| | |||||| |||| Sbjct 794 AGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGT 735 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 || || | ||||||| ||| ||| ||||||||||| || || |||| ||| Sbjct 734 TCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGT 675 Query 43003 ACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCT-CAGCCGCCTCTACAA 43060 ||||| ||| ||| || |||| || | |||| | | |||| || || | | |||| | Sbjct 674 ACATCGAGTTCGTGGCGGACCGGCTGCTTGTGTC-GCTGGGGCTGGAGAAG-CACTACCA 617 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | || || |||||||| ||||||| |||||| || |||||||||| ||||| || Sbjct 616 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 557 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||| |||| ||| |||||| Sbjct 556 CGAGAAGAAGGTCGGCGAGTACCAG 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944277829756240