Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2938 107 2e-18 seq1483 104 2e-17 seq424 104 2e-17 seq523 102 8e-17 >seq2938 Length=1608 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 1392 ACCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1451 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || ||||||||||||||| | || || ||||||||||| || || Sbjct 1452 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1511 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | ||| || || Sbjct 1512 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGAC 1571 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | | | ||||||||||||| || || ||| Sbjct 1572 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 1608 >seq1483 Length=4907 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 4329 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 4270 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 4269 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 4210 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || || || Sbjct 4209 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 4150 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 4149 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 4103 >seq424 Length=20549 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 20257 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 20316 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 20317 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 20376 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || || || Sbjct 20377 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 20436 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 20437 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 20483 >seq523 Length=17530 Score = 102 bits (112), Expect = 8e-17 Identities = 368/562 (65%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTAC-TGTATTGCACAATTTCTGCGCA 154645 || || | |||||| ||||| | || || | | || |||| | || ||||| | ||| Sbjct 1365 GAGGCGAGGTTGCACACGGCGGTCTCCTCCGG-CGACGTGTACTCGACGATTTCCGTGCA 1423 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || || ||| || ||||| ||||| ||||| ||||| ||| ||||||| ||||| Sbjct 1424 CAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGTC 1483 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAG 154765 ||||||| |||| ||||| ||| || || | || | || | || | | || || Sbjct 1484 CTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGG--CAAACCAC 1541 Query 154766 ACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCT--CTCATATTGTTCGTACA 154821 || || |||||| | | | | | | || | || ||| || | ||||||| Sbjct 1542 ACCTCCTGCGCCTGGA-TCGTCT-GCACGCCGCGGCCCTCTGCCTCGTACTTCTCGTACA 1599 Query 154822 GTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACA-GCGGTCGGGACACATC 154880 | || ||||| | ||| ||| || || || || ||| ||||| | |||| Sbjct 1600 GGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCTCGGGTC-CATC 1658 Query 154881 AATGACCACATTTCGTTTTGTTGT--ACGCGTTTCATAAACAAATCCGGCACCCACAAAG 154938 | | |||| ||| | | | | || || ||||| |||| ||||| | ||||| | Sbjct 1659 AGCGTCCAC--TTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCCACAGCG 1716 Query 154939 CGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAA 154998 |||| || | |||||||| | ||| || ||| |||| ||||| | || || Sbjct 1717 CGTAGAAGAGGTCACGCGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGAA 1776 Query 154999 AATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT-- 155056 | | | |||||||| ||||||||||| | || | ||| | || || ||||| || Sbjct 1777 AGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTAC 1836 Query 155057 -TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGC 155115 || || || ||||||| ||| || || ||| |||| |||| || || ||| || Sbjct 1837 CGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAAGC 1896 Query 155116 CGCTGGCCGTGCCGTTGGTGCC 155137 || ||| ||| ||||| ||||| Sbjct 1897 CGTTGGACGTCCCGTTCGTGCC 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612329333560