Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq523 223 3e-53 >seq523 Length=17530 Score = 223 bits (246), Expect = 3e-53 Identities = 970/1511 (64%), Gaps = 64/1511 (4%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| |||||||| || || ||| ||| |||||| ||||| ||||| Sbjct 2107 GCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTT 2048 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | |||| ||| |||| ||| || | ||||| || ||||| || || | Sbjct 2047 GTCGCTTCAAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTC 1988 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || ||||| || ||||| | |||||| || | || || || | Sbjct 1987 ATCAGCAAGGCGGCGGGCGGCATCGGCCTGCACGTCCACAACATCCGCTCCGCCGGCAGC 1928 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || || || || ||||||||| | || || ||||| || || |||||| Sbjct 1927 TACATCGCCGGCACGAACGGGACGTCCAACGGCTTGGTGCCGATGCTGCGTGTGTTCAAC 1868 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || || |||||||||||||| || || | | | |||||| | ||||| |||| Sbjct 1867 AACACTGCCCGTTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATCTAC 1808 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGCGAAAG---AACCACGG 94247 || ||||| ||||| || ||| | ||||||| |||| ||| ||| ||| Sbjct 1807 CTGGAGCCGTGGCATGCCGACATCTTCGGCTTTC----TGCTGCTGAAGCGCAACACCGG 1752 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 ||| || || | || | |||||||||||||| || ||| | || ||||| || || Sbjct 1751 CAAGGACGACCAGCGCGCGCGTGACCTCTTCTACGCGCTGTGGATCCCGGACCTGTTCAT 1692 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 ||| || || ||| | |||| || | || | | || || || || Sbjct 1691 GAAGCGAGTGAAGAGCGAGGGGAAGTGGACGCTGATGGACCCGAGCGCGTGCCCGGGGCT 1632 Query 94368 GTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 | ||| | || | || || | |||| | ||||| | ||||| Sbjct 1631 GAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCG 1572 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 | | | || || | || | || ||||| | ||| | || ||| | || Sbjct 1571 CGGCGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGA 1512 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 ||| || || | ||| ||| ||||||| | |||| |||||| |||||| || | Sbjct 1511 GACCGGCGTCCCGTTCATTCTGTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAA 1452 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| ||||||| ||||||| |||||||| || || |||||||| || || ||||| Sbjct 1451 CCTCGGCACGATCAAGTGCTCGAACCTGTGCACGGAAATCGTCGAGTACACGTCGCCGGA 1392 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTG--CGAGATGCC 94665 |||| || ||||| ||||| | ||||||| |||| | |||||| |||| | Sbjct 1391 GGAGACCGCCGTGTGCAACCTCGCCTCCATCGCCCTGCCGCGCTTCGTGAACGAGGAG-- 1334 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAG--GATG 94722 | || | | | | |||| | |||| || || || | |||| ||| Sbjct 1333 -AAGCG-CGA-------GGTGGATC---ACCAGCTGCTGTACAGCGTCACGAAGCAGATC 1286 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAG-AA 94781 | ||||||||| |||| || ||| |||| |||||| || |||| ||| | Sbjct 1285 ACCCGCAACCTGAACCGGGTCATTGACCGCAACTACTACCCGGT---GGAGACGGCGCGC 1229 Query 94782 CTCA--AACCTGAAGCATCGGCCC-ATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 | || ||| || ||| | |||| | ||| |||| || ||||| | ||||| || | Sbjct 1228 CGCAGCAACATG-CGCAACCGCCCGGTGGGCCTCGGTGTGCAGGGCCTGGCGGATGCCTT 1170 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGA--CGCGGCGGGTTTGAATTTGAACATA 94896 | | |||||||||||| || | || ||| ||| ||||| ||||| | | || Sbjct 1169 CATTCTACTGCGTCTGCCCTTCGTCAGTGCCGAGGCGCAGCGGG--TGAATGCGGAGATC 1112 Query 94897 TTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGC 94956 ||||| | || || | | || || | || | | ||||| | ||| | Sbjct 1111 TTCGAGACGATCTACTTTGCCGCGGTGGAGGCGTCGATGGAGTTGGCGA---AGGAGGAA 1055 Query 94957 GGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 || || |||| | ||| || || | |||||||| || ||||| ||| | Sbjct 1054 GGCCCTTACGAGACCTTCAAGGGCAGTCCGGCGAGCCAGGGCATCTTGCAGTTTGACATG 995 Query 95017 TGGGGTGTGAAGCCCTCG----------GGTCTGTACGACTGGGA-AGCTCTACGC-GCT 95064 ||| ||| ||| || |||| | |||||||| ||| | || | Sbjct 994 TGG---AAGAA-CCCGCGTCCTAACAGCGGTCGCTGGGACTGGGACAGCCTGAAGCAGAA 939 Query 95065 GATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCC 95124 | || | || | ||| || ||| | || || | ||||| |||||||| || || Sbjct 938 GGTGGT-TC-AGGTCGGCCTGCGCAACTCCCTCCTGCTCGCCCCGATGCCCACCGCGTCG 881 Query 95125 ACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAAC 95184 ||| |||||||||| ||||||||||||| ||||| || |||||||| ||| | ||| | Sbjct 880 ACGTCGCAGATCCTCGGCAACAACGAGTGCTTCGAGCCATTCACCTCGAACATCTACGTC 821 Query 95185 AGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACG 95244 | || ||||| || || ||||| || | |||||| ||||| | |||||| | Sbjct 820 CGCCGTGTGCTGAGTGGCGAGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATC 761 Query 95245 TCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTC 95304 | || ||||| || | | | ||| | | | | ||||||||||||| Sbjct 760 AAGCGCGGGCTGTGGAACGAGACGATGCGGAATGAGATCATCTCCTACAACGGCTCCGTC 701 Query 95305 CAGAACATC--CCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGA 95362 | || ||| | || || ||||| ||| |||||| ||||||| ||||||||||||| Sbjct 700 CTGACGATCGACAGC--ATCCCGGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGA 643 Query 95363 TCCCGCAGCGC 95373 ||||||||||| Sbjct 642 TCCCGCAGCGC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494691049176040