Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq523 279 5e-70 seq2277 187 2e-42 seq1483 87.8 2e-12 seq424 87.8 2e-12 >seq523 Length=17530 Score = 279 bits (308), Expect = 5e-70 Identities = 532/771 (69%), Gaps = 21/771 (3%) Strand=Plus/Plus Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 153651 || ||| || || || || || || ||||| ||||| || |||| || |||||| |||| Sbjct 1355 CAGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACG-TGTACTCGACGA 1413 Query 153652 TCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGAT 153711 | || | ||| ||||| ||| || || ||| | || | ||| || |||| | Sbjct 1414 TTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGT 1473 Query 153712 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT-- 153769 |||||||||| ||| | || ||| |||| |||||||||||| |||| |||| ||| Sbjct 1474 TGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGG 1533 Query 153770 -AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 ||||| || |||||||| | | | |||| ||||||||| |||||| Sbjct 1534 CAAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCTGCCTCGTACT 1590 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCG 153888 ||||||||| ||||| ||||| |||||||||||||| || || || ||| || Sbjct 1591 TCTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCTCG 1650 Query 153889 GACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCC 153948 | |||||||| |||| | | ||| || || || ||||||||| ||||| | || Sbjct 1651 GGTCCATCAGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCC 1710 Query 153949 AGAGCGCGTACATGAGGT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAG 154006 | |||||||| | ||||| ||||||| || || ||| ||| ||||||| ||||| Sbjct 1711 ACAGCGCGTAGAAGAGGTCACGCGCGCGCTG--GTCGTCCTTGCCGGTGTTGCGCTTCAG 1768 Query 154007 ATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066 || | || |||||||||| ||||| || || | ||||| ||| | |||||| || Sbjct 1769 CAGCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTT 1828 Query 154067 ACGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||||| |||||||| || |||| || | | |||||||| || |||| ||| || Sbjct 1829 GCGCTTACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGG 1888 Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183 ||| |||| | | || ||||| || ||| | ||||||| || ||| | | Sbjct 1889 CACCAAGCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTT 1948 Query 154184 ATGCACGTTAACGCCAATGCCG-CCGCCGTACTTTGAT-ATGGCAGCGCAGTCGCCCAGC 154241 || |||| | ||| |||||| |||||| | ||| | ||| | ||||| || |||| Sbjct 1949 GTGGACGTGCAGGCCGATGCCGCCCGCCG--CCTTGCTGATGACGGCGCACTCCTTCAGC 2006 Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACGAACACAT 154300 || |||||||||||||||||| || | | || | ||| | ||| ||||| | ||| Sbjct 2007 GTGTCGTAGATGCCGTCGATGCTGTCTTCCTTTGAAG-CGACAAGGAAGCACGAGCTCAT 2065 Query 154301 TTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAA 154351 ||||| | |||| || || |||||||| || | ||||| || || Sbjct 2066 CTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAA 2116 >seq2277 Length=2457 Score = 187 bits (206), Expect = 2e-42 Identities = 371/538 (69%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| || || ||| | |||||| | | || ||||| ||||||| || Sbjct 1066 GCTGCTGCACGCGATCCAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGC 1008 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| ||||| | || | ||| | | |||| || | | |||||| || Sbjct 1007 GGTGGATCGGGAGCGGC---GCGA-GCTTCCAGGAGCGGCTGATCGGGTTCGCCGCGGTG 952 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || || ||||| || ||| | || | | || | | || | Sbjct 951 GAGGGCATCTTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTG 892 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 891 ATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 832 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 831 TTCGCGTGCCTGCTGTACAACGCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 772 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 771 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 713 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| |||||||| || Sbjct 712 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTGGCGGACCG 653 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCT-CGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| | ||| |||| ||||| || || | Sbjct 652 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACCACGTGACGCAG-CCGTTCGACTTCA 594 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| ||||||||||| Sbjct 593 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 536 >seq1483 Length=4907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || |||| Sbjct 4296 GACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCG 4237 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 4236 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 4177 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||| ||||||| || | ||| || || ||||| || || Sbjct 4176 TTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTC 4117 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 4116 ACGAAGATCTGCATGG 4101 >seq424 Length=20549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || |||| Sbjct 20290 GACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCG 20349 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 20350 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 20409 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||| ||||||| || | ||| || || ||||| || || Sbjct 20410 TTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTC 20469 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 20470 ACGAAGATCTGCATGG 20485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496230149147280