Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1483 125 7e-24 seq424 125 7e-24 seq2277 113 4e-20 seq2938 104 2e-17 seq702 89.7 5e-13 >seq1483 Length=4907 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || ||||| || | Sbjct 4329 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 4270 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 4269 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 4210 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | |||||| Sbjct 4209 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 4150 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | | ||| ||||||||||| || || || || |||||||||| Sbjct 4149 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 4101 >seq424 Length=20549 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || ||||| || | Sbjct 20257 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 20316 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 20317 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 20376 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | |||||| Sbjct 20377 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 20436 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | | ||| ||||||||||| || || || || |||||||||| Sbjct 20437 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 20485 >seq2277 Length=2457 Score = 113 bits (124), Expect = 4e-20 Identities = 291/438 (66%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTC-GGGCAGCTTTGCGGCGATATTT 47201 |||||| |||||| || |||||| |||||||||| ||| | | |||| || | || Sbjct 971 TGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCG-CGCTGTTC 913 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 912 TGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 853 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| |||| || || || |||||| | || | || ||| Sbjct 852 GACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGCGCACATCAAGCACAAG 793 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 792 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTT 734 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || |||||||||||| ||||| |||| Sbjct 733 CATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTA 674 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | ||| |||||| Sbjct 673 CATCGAGTTCGTGGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACCACGT 614 Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560 | | || ||||| || ||| | | || ||||| |||||||||| ||||| ||||| Sbjct 613 GACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGA 554 Query 47561 GAAGCGCGTCGGCGAATA 47578 |||| |||||||| || Sbjct 553 GAAGAAGGTCGGCGAGTA 536 >seq2938 Length=1608 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 1393 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1452 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 1453 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1512 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | |||||| Sbjct 1513 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 1572 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| | | ||| ||||||||||| || || || Sbjct 1573 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1607 >seq702 Length=13543 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| |||||| |||||||| || || || ||||||||||||||| | Sbjct 5 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 64 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || ||| ||| | | |||| ||||| | ||| || |||| | | ||| ||| Sbjct 65 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCAACCTCGAGCGCGATCGTCTTG 124 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 |||||||| || || || || || |||||| | |||| ||| Sbjct 125 CCGGTCAGCGTCTTCACGAAGATTTGCATGTC-TATTGATT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475469898391760