Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq523 93.3 4e-14 >seq523 Length=17530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 505/800 (63%), Gaps = 13/800 (2%) Strand=Plus/Minus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACG 122985 || |||| || || || ||| | || | | ||| || | || | | ||| || |||| Sbjct 2196 TCCTGCGTGTTGCCATCGGCATCCATGTTGGTGACCTCAAGAATGTGCGCGAGACGTACG 2137 Query 122986 ATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGA 123045 | ||||||| | || ||||| ||||| | || || | ||| |||||||||| Sbjct 2136 AGCTGATGTCGCGCGGCTTCTTCACCCACGCCACCCCGACCCTCTTCAACGCCGGCACGC 2077 Query 123046 AGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTA 123105 | ||| ||| || ||||| || | || | | |||||||||||| ||| | Sbjct 2076 CGAAGCCGCAGATGAGCTCGTGCTTCCTTGTCGCTTCAAAGGAAGACAGCATCGACGGCA 2017 Query 123106 TCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGA 123165 |||| || || || || ||||| | || ||| | |||||||| ||| || Sbjct 2016 TCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCGGGCGGCATCGGCCTGC 1957 Query 123166 ACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCG 123225 |||| ||| || | | | ||| ||| |||| |||| |||| | || || Sbjct 1956 ACGTCCACAACATCCGCTCCGCCGGCAGCTACATCGCCGGCACGAACGGGACGTCCAACG 1897 Query 123226 GGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC- 123284 | | | | |||||||| || | ||| ||| | | || |||| |||||||||||| Sbjct 1896 GCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCCCGTTACGTGGACCAGGGCGGCG 1837 Query 123285 --AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATT 123342 || ||||| || || | || ||||| || || |||||||| | || | | || | Sbjct 1836 GTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTGGCATGCCGACATCTTCGGCT 1777 Query 123343 TTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACG 123402 || | | || ||||||| || ||| || || || || || | || |||| Sbjct 1776 TTCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGCGCGCGTGACCTCTTCTACG 1717 Query 123403 CTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCA 123462 | | ||| | || || |||| ||| || || || ||| || |||| |||| | Sbjct 1716 CGCTGTGGATCCCGGACCTGTTCATGAAGCGAGTGAAGAGCGAGGGGAAGTGGACGCTGA 1657 Query 123463 TGTGTCCCGATCG-GTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 || | ||||| || ||| || || |||| ||| |||||| | |||| || || Sbjct 1656 TG-GACCCGAGCGCGTGCCCGGGGCTGAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTG 1598 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAACAGGT-TAGTCAGGTTCCGGCACGTGATTTGTT 123580 |||| | | |||||| || ||| || || | | | | ||| | || ||| Sbjct 1597 TACGAGAAGTACGAGGCAGAGGGCCGCGGCGTGCAGAC-GATCCAGGCGCAGGAGGTGT- 1540 Query 123581 CAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGA 123637 ||| || |||| | || |||| ||||| |||| ||| || ||||| || Sbjct 1539 --GGTTTGCCATCCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATTCTGTACAAGGA 1482 Query 123638 CGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTG 123697 ||| |||||||| || | || |||| ||| | || || || || || || || || Sbjct 1481 CGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACGATCAAGTGCTCGAACCTGTG 1422 Query 123698 CTCCGAAATTATCGAATACA 123717 | | ||||| |||| |||| Sbjct 1421 CACGGAAATCGTCGAGTACA 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451973825442040