Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq523 235 7e-57 seq2277 107 2e-18 seq1467 86.0 8e-12 >seq523 Length=17530 Score = 235 bits (260), Expect = 7e-57 Identities = 1085/1697 (64%), Gaps = 51/1697 (3%) Strand=Plus/Plus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 ||||| | || ||||| |||| ||||||||||| ||| || ||||| || | || Sbjct 471 GCCTTCGTGCGCAGGTAATACACACCCGTCTTGAGACCCGACTCCCAGGTGTAGAAGAGC 530 Query 115609 ATTGAGGACAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 115667 || || | | || |||| || || || | || ||||||||||| ||||| || Sbjct 531 ATCGACGTGATCTGACCAGAG-GTGGGGCTCTGCAGGAAGAGGTTCAGCGACTGGGACTG 589 Query 115668 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 115727 |||||| | | || || || ||||| || |||| | | | ||| ||||| Sbjct 590 GTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGCGGGATCTCCCA 649 Query 115728 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCC 115787 ||| || | |||||| | ||| | || || ||||| |||| | ||| ||||| Sbjct 650 CACGGTGCGGTAGAGCTCCTTGAGGTCGTCCGGGATGCTGTCGATCGTCAGGACGGAGCC 709 Query 115788 ACCTGCCTTGACCATGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTCTTGAG 115844 || | | |||| || ||| ||| | | ||| || || ||| |||| Sbjct 710 GT-TG--TAGGAGATGATCTCATTCCGCATCGTCTCGTTCCACAGCCCGCGCTTGATGAG 766 Query 115845 ATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 115904 ||| |||||||| ||| || || || ||||| || || || | | || Sbjct 767 GTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAGCACACGGCGGACGTA 826 Query 115905 GATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 115964 |||||| | ||| ||||||| |||||||| ||||| || | ||| || | || || || Sbjct 827 GATGTTCGAGGTGAATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGC 886 Query 115965 TGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACC-----CCCCTAATGCGT 116019 |||||||| || || | || ||| |||||| || || ||| | ||| ||| Sbjct 887 GGTGGGCATCGGGGCGAGCAGGAGGGAGTTGCGCAGGCCGACCTGAACCACCTTCTGC-- 944 Query 116020 TCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCC-------CTCCCACATATC 116072 || ||| ||||||||| || || | ||| | || |||||| || Sbjct 945 ---TTCAGGCTGTCCCAGTCCCAGC-GACCGCTGTTAGGACGCGGGTTCTTCCACATGTC 1000 Query 116073 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 |||||| | ||| || ||| ||| || |||| || ||||| || ||||| || | Sbjct 1001 AAACTGCAAGATGCCCTGGCTCGCCGGACTGCCCTTGAAGGTCTCGTAAGGGCCTTCCTC 1060 Query 116133 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 || |||||| || |||||| | || || || || ||||| || || || Sbjct 1061 CTTCGCCAACTCCATCGACGCCTCCACCGCGGCAAAGTAGATCGTCTCGAAGATCTCCGC 1120 Query 116193 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGC 116252 ||||| || |||||| | | || | ||||| | ||| || ||||||| Sbjct 1121 ATTCACCCGCTGCGCCTCGGCACTGACGAAGGGCAGACGCAGTAGAATGAAGGCATCCGC 1180 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 || || || ||||||||||| | ||||| | | ||| || || || ||||| Sbjct 1181 CAGGCCCTGCACACCGAGGCCCACCGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGTCTC 1240 Query 116313 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 ||| || || | || | || || |||| || || || ||||| ||| |||| Sbjct 1241 CACCGGGTAGTAGTTGCGGTCAATGACCCGGTTCAGGTTGCGGGTGATCTGCTTCGTGAC 1300 Query 116373 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 116432 | ||| | || ||| | ||| |||| || || || | || ||||| Sbjct 1301 GCTGTACAGCAGCTGGTGATCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGGGC 1360 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 ||| || || || || ||||| | |||||| ||| |||||||| | |||||||| Sbjct 1361 GATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATTTCCGT 1420 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 |||| || || | ||| || ||||| | |||||| || || ||||| |||| ||||| Sbjct 1421 GCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC 1480 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||| || || | || || ||||| | || |||| ||| || || ||| Sbjct 1481 GTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAACCA 1540 Query 116613 TACATCG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 116671 || || ||| |||| | || | | || ||||| |||||||||| ||| | Sbjct 1541 CACCTCCTGCGCCTGGATCGTCTGCAC-GCCGCGGCCCTCTGCCTCGTACTTCTCGTACA 1599 Query 116672 GGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || ||| ||||| || || ||| | || || ||| || | || || | | Sbjct 1600 GGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGC-CCCGGGCACGCGCTCGGGTCC-AT 1657 Query 116730 GAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 || | ||| || || | ||| ||| | ||||||||||| ||||| |||||||| |||| Sbjct 1658 CAGCGTCCACTTCCCCTCGCTCTTCA-CTCGCTTCATGAACAGGTCCGGGATCCACAGCG 1716 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 | ||||||| || || ||| ||| || || | || ||| | || | || Sbjct 1717 CGTAGAAGAGGTCACGC--GCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAG 1774 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG--- 116903 |||| | | ||| || || |||||||| |||||||| | |||| | |||||||| Sbjct 1775 AAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTT 1834 Query 116904 ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 || || |||||| || || | || || ||| || || || ||||| || | | Sbjct 1835 ACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAA 1894 Query 116964 ACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCTGACATCGTGG 117021 || | || || || || || ||| || | | | || | || | |||| Sbjct 1895 GCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGG 1952 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 | ||||| || || || || ||| ||| ||| ||||||||| | || || || Sbjct 1953 ACGTGCAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCG 2012 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA---CATTTGT 117138 ||||| || ||||| ||| |||| |||| |||||||| ||| ||| || Sbjct 2013 TAGATGCCGTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCA---CGAGCTCATCTGC 2069 Query 117139 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 117198 ||| | || || || |||||||||||||| || || |||||| |||| | || | ||| Sbjct 2070 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGAC 2129 Query 117199 ATCTTATCGTAGGTCTC 117215 ||| ||||| ||||| Sbjct 2130 ATCAGCTCGTACGTCTC 2146 >seq2277 Length=2457 Score = 107 bits (118), Expect = 2e-18 Identities = 345/528 (65%), Gaps = 12/528 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 535 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 594 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || || | | | || | | || ||| | | || || || Sbjct 595 GAAGTCGAACGGCTGCGTCACGTGGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCG 654 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| ||| |||| ||||||| |||||| ||| | |||||| ||||| || Sbjct 655 GTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCAC 714 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || |||||||| |||||||| | ||| |||| ||| || ||| | ||| | | Sbjct 715 CGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAG 774 Query 127471 AATAGTGTC-CACCCCAGGTCTATTGCGTAAAGTC----TTGAAGAGTTC-CACAGCAAA 127524 | || | | ||| || ||| | | || ||| | || ||| || || Sbjct 775 CACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGCGTTGTACAGCAGGCAC-GCGAA 831 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| || ||||| || || || ||| ||| || ||||| Sbjct 832 GTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCCGGCAT 891 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 || || |||||||||| |||||| | ||| || || || || ||||||||||| ||||| Sbjct 892 CAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAGATGCCCTC 951 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTT 127704 ||| |||||| | | || ||||| || | || | | | | | |||| Sbjct 952 CACCGCGGCGAACCCGATCAGCCGCTCCTGGAA-GCTCGCGCC--GCTCCCGATCCACCG 1008 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || |||||||| ||||| |||| ||| || |||| ||||||||||| Sbjct 1009 CACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 1056 >seq1467 Length=5004 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 12695 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 12754 |||||| || |||||||| || | |||| |||||||| ||||||||| || |||||| Sbjct 2424 GATCTTGCGGTCAAAGCGGCCGGAGCGGGTGAGGGCGTTGTCAAGGATGTCGGCGCGGTT 2365 Query 12755 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCA 12801 |||||| || | || | |||||||| ||| | ||||||||||| Sbjct 2364 CGTCGCGGCCAGCACCATGATGCCCGAGGCGTCCTTGAAGCCATCCA 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613467329700840