Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2277 156 7e-33 >seq2277 Length=2457 Score = 156 bits (172), Expect = 7e-33 Identities = 311/453 (69%), Gaps = 6/453 (1%) Strand=Plus/Plus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | || ||||||||||| ||||| |||||||||| || || || Sbjct 529 CTTCTGGTACT-CGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCA 587 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| || | | ||||||| ||| ||||| | || || | | | | Sbjct 588 TCTCCATGAAGTCGAACGGCTGCGTCACGTGGTAGTGCTTCTCCAGCCCCAGCGACACAA 647 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGC 159805 ||| || ||| ||||| || |||||||| || | ||||| |||| ||| || || | | Sbjct 648 GCAGCCGGTCCGCCACGAACTCGATGTA-CTGCGACATCAGCTCCGCGTTCATGCCGATC 706 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 |||| || || ||||| || | | ||||| ||| || | ||||| || | Sbjct 707 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATG 766 Query 159866 ATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 |||| | || || ||| | | ||||| | ||||| | || |||| |||||| Sbjct 767 ATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGCGTTGTACAGCAGGCAC 826 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || ||||| |||||| |||||||| || ||||| | ||||||| | | || ||| Sbjct 827 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCC 886 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGAT 160044 ||||| | ||| ||| || ||||| || | | |||| || | ||| || ||||| Sbjct 887 GGCATCAGCCCGCGCTTCTTCAGCCAGAACA-GCGCGCAGAACGACCCGGAGAAGAAGAT 945 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 |||||||| || || ||| | | |||| ||| Sbjct 946 GCCCTCCACCGCGGCGAACCCGATCAGCCGCTC 978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795103524851440