Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2277 324 1e-83 seq1483 134 1e-26 seq424 134 1e-26 seq2938 127 2e-24 >seq2277 Length=2457 Score = 324 bits (358), Expect = 1e-83 Identities = 640/930 (69%), Gaps = 24/930 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| || || || || ||||| ||||| ||||| || || || || || |||| Sbjct 517 CATCACACCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 576 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | || ||||||||| | | | Sbjct 577 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTGGTAGTGCTTC-TCCAGCC 635 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||||||| | | ||| Sbjct 636 CCAGCGACACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGT 695 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 696 TCATG-CCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 753 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 754 CGCGTCCACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGCGT 812 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| || ||||| |||| ||||||||| | || || || ||||||| Sbjct 813 TGTACAGCAGGCACGCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 872 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 873 TGAACGTCAGCCCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACC 932 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| |||||| || || ||||| | | ||| ||||| ||| | || Sbjct 933 CGGAGAAGAAGATGCCCTCCACCGCGGCGAACCCGATCAGCCGCTCCTGGAAGCTCGCGC 992 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | ||| ||||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 993 C---GCTCCCGATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCT 1049 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 1050 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 1108 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | |||||||| | ||||||||| | || || ||||| || ||| Sbjct 1109 ACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGC 1168 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| ||||| | || || ||| | ||||| ||| Sbjct 1169 GCCTCCGGCACCTTCACGTCGCCCATGAACCGCTCCGCAAGGTTCTCGATCACGATCCCG 1228 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| ||||||| || |||||||||||||||||||| || ||||| |||||||| Sbjct 1229 TCGCTGCCGGCGAAGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 1288 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC- 133421 | ||||||||||| |||| ||| |||||| | |||||| | ||||| || || Sbjct 1289 TTCACCCAGTCGCGCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA----GATGCA 1344 Query 133422 -CTCGGCT--TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAA 133478 ||| || | |||||| | | ||| ||||| || || || || | ||| | Sbjct 1345 GCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACACGATCGGGAACAGCACGTA 1404 Query 133479 CCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 ||| ||||| |||||| ||||||||| Sbjct 1405 GCGGAACGGGTTCTCGCGCTGCAGCGGCTC 1434 >seq1483 Length=4907 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | |||| |||||||| | | Sbjct 4103 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 4162 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 4163 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 4220 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 4221 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACA 4280 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| ||||||| || || | || ||| Sbjct 4281 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 4330 >seq424 Length=20549 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | |||| |||||||| | | Sbjct 20483 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 20424 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 20423 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 20366 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 20365 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACA 20306 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| ||||||| || || | || ||| Sbjct 20305 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 20256 >seq2938 Length=1608 Score = 127 bits (140), Expect = 2e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 38255 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA 38314 ||| || ||||| || ||||| || ||| | |||| |||||||||| ||||| | | Sbjct 1608 CGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGCGACACGATCGA 1549 Query 38315 -AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTC 38372 |||| | || | || |||| ||||| ||||| || ||||||| |||| ||||| || Sbjct 1548 GAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCCTG 1491 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| |||||||| || | ||||| ||| |||||||||||||| ||| Sbjct 1490 ATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAG 1431 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||||| | |||||||| Sbjct 1430 GAGTCGACGCTGCACCTCGTGCTGCG 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500140295020160