Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1483 102 5e-17 seq424 102 5e-17 seq2938 89.7 3e-13 seq702 82.4 5e-11 >seq1483 Length=4907 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || |||||||| || ||||| || Sbjct 4293 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAG 4234 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 4233 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 4174 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || |||| | || || || || || || |||||||| Sbjct 4173 TCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 4114 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4113 AAGATCTGCAT 4103 >seq424 Length=20549 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || |||||||| || ||||| || Sbjct 20293 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAG 20352 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 20353 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 20412 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || |||| | || || || || || || |||||||| Sbjct 20413 TCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 20472 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 20473 AAGATCTGCAT 20483 >seq2938 Length=1608 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 1429 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 1488 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 1489 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 1548 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | |||||| || |||| | || || || || || || |||||||| Sbjct 1549 TCGATCGTGTCGCTGGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1607 >seq702 Length=13543 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || || |||||||| |||| | ||||||||||| Sbjct 4 CAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 63 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || ||| | |||| || | ||||||||| |||| | || || || Sbjct 64 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCAACCTCGAGCGCGATCGTCTT 123 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||| ||||| Sbjct 124 GCCGGTCAGCGTCTTCACGAAGATTTGCAT 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324613030302072